Gene annotation
Transcriptome id Sobic.003G037700.1,Sobic.003G037700.4,Sobic.003G037700.3,Sobic.003G037700.2
Synonym TAF5, Sb03g003380
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6Q164 , A0A1B6Q163 , A0A1W0VVN3 , A0A1W0VVQ4
Pfam PF00400
Panther DB PTHR22844 PTHR22844:SF233
NCBI CDD KOG1446; Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G25150 : Transducin/WD40 repeat-like superfamily protein,TBP-associated factor 5
RAP-DB (Rice) LOC_Os01g09020.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023098
Brachypodium KQK03086 , KQK03087 , PNT70103
Barley HORVU3Hr1G020220.13 , HORVU3Hr1G020220.12 , HORVU3Hr1G020220.11 , HORVU3Hr1G020220.10 , HORVU3Hr1G020220.14 , HORVU3Hr1G020220.9 , HORVU3Hr1G020220.8 , HORVU3Hr1G020220.3 , HORVU3Hr1G020220.2 , HORVU3Hr1G020220.1 , HORVU3Hr1G020220.7 , HORVU3Hr1G020220.6 , HORVU3Hr1G020220.5 , HORVU3Hr1G020220.4
Wheat TraesCS3D02G113400 , TraesCS3B02G130100 , TraesCS3A02G111300
Populus -


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cDNA sequences
Sobic.003G037700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
2 Sobic.003G173950 - -
3 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
4 Sobic.003G170100 - -
5 Sobic.001G356500 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
6 Sobic.004G099800 expressed protein K14376: poly(A) polymerase
7 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
8 Sobic.005G013200 BAH domain containing protein, expressed -
9 Sobic.003G033200 F-box/LRR-repeat protein, putative, expressed -
10 Sobic.002G380500 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2
11 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
12 Sobic.003G390400 expressed protein -
13 Sobic.003G108700 RNA recognition motif, putative, expressed -
14 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
15 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
16 Sobic.001G162300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
17 Sobic.005G110472 - -
18 Sobic.010G245000 DTW domain containing protein, putative, expressed -
19 Sobic.002G278000 endonuclease/exonuclease/phosphatase family protein, putative, expressed K10772: AP endonuclease 2
20 Sobic.001G257300 OsFBL52 - F-box domain and LRR containing protein, expressed -


Gene co-expression network
sample Sobic003G037700 Sobic003G037700 Sobic006G116100 Sobic006G116100 Sobic003G037700--Sobic006G116100 Sobic003G173950 Sobic003G173950 Sobic003G037700--Sobic003G173950 Sobic003G160000 Sobic003G160000 Sobic003G037700--Sobic003G160000 Sobic003G170100 Sobic003G170100 Sobic003G037700--Sobic003G170100 Sobic001G356500 Sobic001G356500 Sobic003G037700--Sobic001G356500 Sobic004G099800 Sobic004G099800 Sobic003G037700--Sobic004G099800 Sobic003G241200 Sobic003G241200 Sobic003G037700--Sobic003G241200 Sobic005G013200 Sobic005G013200 Sobic003G037700--Sobic005G013200 Sobic003G033200 Sobic003G033200 Sobic003G037700--Sobic003G033200 Sobic008G153000 Sobic008G153000 Sobic006G116100--Sobic008G153000 Sobic008G149800 Sobic008G149800 Sobic006G116100--Sobic008G149800 Sobic008G173100 Sobic008G173100 Sobic006G116100--Sobic008G173100 Sobic006G116100--Sobic003G160000 Sobic002G063900 Sobic002G063900 Sobic006G116100--Sobic002G063900 Sobic002G357700 Sobic002G357700 Sobic006G116100--Sobic002G357700 Sobic006G116100--Sobic003G241200 Sobic009G119000 Sobic009G119000 Sobic006G116100--Sobic009G119000 Sobic003G416700 Sobic003G416700 Sobic006G116100--Sobic003G416700 Sobic003G173950--Sobic001G356500 Sobic003G173950--Sobic003G241200 Sobic003G197800 Sobic003G197800 Sobic003G173950--Sobic003G197800 Sobic002G320500 Sobic002G320500 Sobic003G173950--Sobic002G320500 Sobic002G157000 Sobic002G157000 Sobic003G173950--Sobic002G157000 Sobic007G065400 Sobic007G065400 Sobic003G173950--Sobic007G065400 Sobic004G084300 Sobic004G084300 Sobic003G173950--Sobic004G084300 Sobic009G102500 Sobic009G102500 Sobic003G173950--Sobic009G102500 Sobic001G206100 Sobic001G206100 Sobic003G173950--Sobic001G206100 Sobic003G160000--Sobic006G116100 Sobic010G236400 Sobic010G236400 Sobic003G160000--Sobic010G236400 Sobic003G160000--Sobic003G241200 Sobic003G160000--Sobic008G153000 Sobic010G204400 Sobic010G204400 Sobic003G160000--Sobic010G204400 Sobic007G026000 Sobic007G026000 Sobic003G160000--Sobic007G026000 Sobic004G084700 Sobic004G084700 Sobic003G160000--Sobic004G084700 Sobic001G452000 Sobic001G452000 Sobic003G160000--Sobic001G452000 Sobic006G032400 Sobic006G032400 Sobic003G160000--Sobic006G032400 Sobic005G110472 Sobic005G110472 Sobic003G170100--Sobic005G110472 Sobic003G268300 Sobic003G268300 Sobic003G170100--Sobic003G268300 Sobic003G200200 Sobic003G200200 Sobic003G170100--Sobic003G200200 Sobic007G096600 Sobic007G096600 Sobic003G170100--Sobic007G096600 Sobic002G144933 Sobic002G144933 Sobic003G170100--Sobic002G144933 Sobic003G170100--Sobic002G157000 Sobic001G152320 Sobic001G152320 Sobic003G170100--Sobic001G152320 Sobic007G137900 Sobic007G137900 Sobic003G170100--Sobic007G137900 Sobic001G162300 Sobic001G162300 Sobic003G170100--Sobic001G162300 Sobic001G356500--Sobic003G173950 Sobic001G356500--Sobic001G206100 Sobic001G356500--Sobic007G065400 Sobic002G264200 Sobic002G264200 Sobic001G356500--Sobic002G264200 Sobic001G356500--Sobic002G320500 Sobic001G356500--Sobic003G170100 Sobic002G121600 Sobic002G121600 Sobic001G356500--Sobic002G121600 Sobic001G257300 Sobic001G257300 Sobic001G356500--Sobic001G257300 Sobic002G161000 Sobic002G161000 Sobic001G356500--Sobic002G161000 Sobic006G079400 Sobic006G079400 Sobic004G099800--Sobic006G079400 Sobic004G099800--Sobic003G037700 Sobic010G232200 Sobic010G232200 Sobic004G099800--Sobic010G232200 Sobic002G145101 Sobic002G145101 Sobic004G099800--Sobic002G145101 Sobic004G007100 Sobic004G007100 Sobic004G099800--Sobic004G007100 Sobic006G048500 Sobic006G048500 Sobic004G099800--Sobic006G048500 Sobic004G326200 Sobic004G326200 Sobic004G099800--Sobic004G326200 Sobic005G144400 Sobic005G144400 Sobic004G099800--Sobic005G144400 Sobic002G243900 Sobic002G243900 Sobic004G099800--Sobic002G243900 Sobic003G241200--Sobic004G084300 Sobic006G165000 Sobic006G165000 Sobic003G241200--Sobic006G165000 Sobic003G241200--Sobic006G032400 Sobic002G248400 Sobic002G248400 Sobic003G241200--Sobic002G248400 Sobic003G241200--Sobic002G320500 Sobic003G241200--Sobic003G173950 Sobic003G241200--Sobic010G236400 Sobic003G241200--Sobic003G200200 Sobic003G241200--Sobic002G157000 Sobic002G103600 Sobic002G103600 Sobic005G013200--Sobic002G103600 Sobic010G129200 Sobic010G129200 Sobic005G013200--Sobic010G129200 Sobic008G162900 Sobic008G162900 Sobic005G013200--Sobic008G162900 Sobic001G407200 Sobic001G407200 Sobic005G013200--Sobic001G407200 Sobic001G222500 Sobic001G222500 Sobic005G013200--Sobic001G222500 Sobic002G408200 Sobic002G408200 Sobic005G013200--Sobic002G408200 Sobic008G028700 Sobic008G028700 Sobic005G013200--Sobic008G028700 Sobic001G251700 Sobic001G251700 Sobic005G013200--Sobic001G251700 Sobic005G013200--Sobic004G084300 Sobic001G311500 Sobic001G311500 Sobic003G033200--Sobic001G311500 Sobic001G456900 Sobic001G456900 Sobic003G033200--Sobic001G456900 Sobic001G384300 Sobic001G384300 Sobic003G033200--Sobic001G384300 Sobic003G033200--Sobic002G145101 Sobic003G033200--Sobic001G356500 Sobic004G258700 Sobic004G258700 Sobic003G033200--Sobic004G258700 Sobic003G033200--Sobic008G162900 Sobic003G033200--Sobic005G013200 Sobic001G228701 Sobic001G228701 Sobic003G033200--Sobic001G228701
Octagon: transcription factors


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