Gene annotation
Transcriptome id Sobic.003G117700.1
Synonym Sb03g009920
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt C5XFV7
Pfam PF00642
Panther DB PTHR12506 PTHR12506:SF26
NCBI CDD KOG1677; CCCH-type Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G47850 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os01g15350.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a035306 , Zm00025a023963 , Zm00025a023968 , Zm00025a035312
Brachypodium PNT70304 , PNT70302 , PNT70303 , PNT70301 , KQK03691 , KQK03693 , KQK03692 , KQK03690
Barley HORVU3Hr1G035750.9 , HORVU3Hr1G035750.8 , HORVU3Hr1G035720.4 , HORVU3Hr1G035720.5 , HORVU3Hr1G035750.7 , HORVU3Hr1G035750.6 , HORVU3Hr1G035720.2 , HORVU3Hr1G035750.2 , HORVU3Hr1G035720.3 , HORVU3Hr1G035750.1 , HORVU3Hr1G035720.1 , HORVU3Hr1G035750.3
Wheat TraesCS3B02G205900 , TraesCS3D02G182200 , TraesCS3D02G182200 , TraesCS3D02G182200 , TraesCS3B02G206400 , TraesCS3B02G206400 , TraesCS3A02G178700 , TraesCS3A02G178700 , TraesCS3A02G178700 , TraesCS3A02G179200
Populus -


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cDNA sequences
Sobic.003G117700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
2 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
3 Sobic.003G220200 protein kinase family protein, putative, expressed K17541: SCY1-like protein 2
4 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
5 Sobic.003G173950 - -
6 Sobic.007G145200 serine esterase family protein, putative, expressed -
7 Sobic.003G170100 - -
8 Sobic.001G257300 OsFBL52 - F-box domain and LRR containing protein, expressed -
9 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
10 Sobic.009G104300 - -
11 Sobic.002G186000 CD2-binding protein-related, putative, expressed K13099: CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2
12 Sobic.001G094000 expressed protein -
13 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
14 Sobic.001G395500 SET domain containing protein, expressed K11430: [histone H3]-lysine27 N-trimethyltransferase EZH2
15 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
16 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
17 Sobic.004G118700 cbxX, chromosomal, putative, expressed -
18 Sobic.006G165000 RNA recognition motif containing protein, expressed -
19 Sobic.005G195800 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
20 Sobic.001G206100 expressed protein -


Gene co-expression network
sample Sobic003G117700 Sobic003G117700 Sobic008G063000 Sobic008G063000 Sobic003G117700--Sobic008G063000 Sobic003G241200 Sobic003G241200 Sobic003G117700--Sobic003G241200 Sobic003G220200 Sobic003G220200 Sobic003G117700--Sobic003G220200 Sobic003G200200 Sobic003G200200 Sobic003G117700--Sobic003G200200 Sobic003G173950 Sobic003G173950 Sobic003G117700--Sobic003G173950 Sobic007G145200 Sobic007G145200 Sobic003G117700--Sobic007G145200 Sobic003G170100 Sobic003G170100 Sobic003G117700--Sobic003G170100 Sobic001G257300 Sobic001G257300 Sobic003G117700--Sobic001G257300 Sobic001G251700 Sobic001G251700 Sobic003G117700--Sobic001G251700 Sobic001G094000 Sobic001G094000 Sobic008G063000--Sobic001G094000 Sobic003G268300 Sobic003G268300 Sobic008G063000--Sobic003G268300 Sobic006G246900 Sobic006G246900 Sobic008G063000--Sobic006G246900 Sobic002G157000 Sobic002G157000 Sobic008G063000--Sobic002G157000 Sobic008G063000--Sobic003G200200 Sobic008G173900 Sobic008G173900 Sobic008G063000--Sobic008G173900 Sobic002G006900 Sobic002G006900 Sobic008G063000--Sobic002G006900 Sobic002G144933 Sobic002G144933 Sobic008G063000--Sobic002G144933 Sobic004G145500 Sobic004G145500 Sobic008G063000--Sobic004G145500 Sobic004G084300 Sobic004G084300 Sobic003G241200--Sobic004G084300 Sobic006G165000 Sobic006G165000 Sobic003G241200--Sobic006G165000 Sobic006G032400 Sobic006G032400 Sobic003G241200--Sobic006G032400 Sobic002G248400 Sobic002G248400 Sobic003G241200--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic003G241200--Sobic002G320500 Sobic003G241200--Sobic003G173950 Sobic010G236400 Sobic010G236400 Sobic003G241200--Sobic010G236400 Sobic003G241200--Sobic003G200200 Sobic003G241200--Sobic002G157000 Sobic003G220200--Sobic007G145200 Sobic002G157300 Sobic002G157300 Sobic003G220200--Sobic002G157300 Sobic003G220200--Sobic002G157000 Sobic003G220200--Sobic002G320500 Sobic007G137900 Sobic007G137900 Sobic003G220200--Sobic007G137900 Sobic003G220200--Sobic001G251700 Sobic007G011400 Sobic007G011400 Sobic003G220200--Sobic007G011400 Sobic004G349900 Sobic004G349900 Sobic003G220200--Sobic004G349900 Sobic001G107500 Sobic001G107500 Sobic003G220200--Sobic001G107500 Sobic003G200200--Sobic002G157000 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic003G200200--Sobic001G251700 Sobic007G096600 Sobic007G096600 Sobic003G200200--Sobic007G096600 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic003G200200--Sobic008G173900 Sobic003G200200--Sobic003G170100 Sobic001G356500 Sobic001G356500 Sobic003G173950--Sobic001G356500 Sobic003G173950--Sobic003G241200 Sobic003G197800 Sobic003G197800 Sobic003G173950--Sobic003G197800 Sobic003G173950--Sobic002G320500 Sobic003G173950--Sobic002G157000 Sobic007G065400 Sobic007G065400 Sobic003G173950--Sobic007G065400 Sobic003G173950--Sobic004G084300 Sobic009G102500 Sobic009G102500 Sobic003G173950--Sobic009G102500 Sobic001G206100 Sobic001G206100 Sobic003G173950--Sobic001G206100 Sobic007G145200--Sobic003G220200 Sobic010G026400 Sobic010G026400 Sobic007G145200--Sobic010G026400 Sobic006G082600 Sobic006G082600 Sobic007G145200--Sobic006G082600 Sobic001G451000 Sobic001G451000 Sobic007G145200--Sobic001G451000 Sobic009G127900 Sobic009G127900 Sobic007G145200--Sobic009G127900 Sobic001G446900 Sobic001G446900 Sobic007G145200--Sobic001G446900 Sobic007G145200--Sobic002G157300 Sobic004G290800 Sobic004G290800 Sobic007G145200--Sobic004G290800 Sobic001G486300 Sobic001G486300 Sobic007G145200--Sobic001G486300 Sobic005G110472 Sobic005G110472 Sobic003G170100--Sobic005G110472 Sobic003G170100--Sobic003G268300 Sobic003G170100--Sobic003G200200 Sobic003G170100--Sobic007G096600 Sobic003G170100--Sobic002G144933 Sobic003G170100--Sobic002G157000 Sobic001G152320 Sobic001G152320 Sobic003G170100--Sobic001G152320 Sobic003G170100--Sobic007G137900 Sobic001G162300 Sobic001G162300 Sobic003G170100--Sobic001G162300 Sobic001G257300--Sobic001G206100 Sobic006G013500 Sobic006G013500 Sobic001G257300--Sobic006G013500 Sobic001G257300--Sobic003G170100 Sobic006G080300 Sobic006G080300 Sobic001G257300--Sobic006G080300 Sobic001G257300--Sobic003G200200 Sobic002G001600 Sobic002G001600 Sobic001G257300--Sobic002G001600 Sobic004G213000 Sobic004G213000 Sobic001G257300--Sobic004G213000 Sobic002G161000 Sobic002G161000 Sobic001G257300--Sobic002G161000 Sobic001G257300--Sobic001G162300 Sobic001G251700--Sobic007G137900 Sobic001G251700--Sobic003G200200 Sobic001G251700--Sobic002G157300 Sobic001G251700--Sobic002G157000 Sobic001G251700--Sobic006G082600 Sobic001G251700--Sobic002G248400 Sobic001G251700--Sobic002G320500 Sobic001G251700--Sobic003G268300 Sobic001G251700--Sobic003G220200
Octagon: transcription factors


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