Gene annotation
Transcriptome id Sobic.003G331500.1
Synonym Sb03g037700
Functional annotation NHL25, putative, expressed
UniProt A0A1W0W035
Pfam PF03168
Panther DB PTHR31852 PTHR31852:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27080 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RAP-DB (Rice) LOC_Os01g59680.1 : NHL25, putative, expressed
MaizeGDB (Corn) Zm00025a027134
Brachypodium KQK10259
Barley HORVU3Hr1G079540.1 , HORVU3Hr1G079540.2 , HORVU3Hr1G079540.3
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G269300 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed -
2 Sobic.003G331600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBX168 - F-box domain containing protein, expressed -
3 Sobic.002G269400 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed -
4 Sobic.010G179800 OsFBK16 - F-box domain and kelch repeat containing protein, expressed -
5 Sobic.009G181400 expressed protein -
6 Sobic.004G228100 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
7 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
8 Sobic.002G376000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
9 Sobic.002G328550 - K14411: RNA-binding protein Musashi
10 Sobic.004G110400 RING-H2 finger protein, putative, expressed -
11 Sobic.003G271201 - -
12 Sobic.002G323900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PRAS-rich protein, putative, expressed -
13 Sobic.004G279700 expressed protein -
14 Sobic.004G325900 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
15 Sobic.010G021100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K12734: peptidyl-prolyl cis-trans isomerase-like 3
16 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
17 Sobic.004G309000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
18 Sobic.001G088300 - -
19 Sobic.001G295700 Triacylglycerol lipase like protein (Os)(PubMedID : 27208977)@triacylglycerol lipase like protein, putative, expressed -
20 Sobic.002G138700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G331500 Sobic003G331500 Sobic002G269300 Sobic002G269300 Sobic003G331500--Sobic002G269300 Sobic003G331600 Sobic003G331600 Sobic003G331500--Sobic003G331600 Sobic002G269400 Sobic002G269400 Sobic003G331500--Sobic002G269400 Sobic010G179800 Sobic010G179800 Sobic003G331500--Sobic010G179800 Sobic009G181400 Sobic009G181400 Sobic003G331500--Sobic009G181400 Sobic004G228100 Sobic004G228100 Sobic003G331500--Sobic004G228100 Sobic006G167800 Sobic006G167800 Sobic003G331500--Sobic006G167800 Sobic002G376000 Sobic002G376000 Sobic003G331500--Sobic002G376000 Sobic002G328550 Sobic002G328550 Sobic003G331500--Sobic002G328550 Sobic002G323900 Sobic002G323900 Sobic002G269300--Sobic002G323900 Sobic006G259000 Sobic006G259000 Sobic002G269300--Sobic006G259000 Sobic003G416500 Sobic003G416500 Sobic002G269300--Sobic003G416500 Sobic001G489500 Sobic001G489500 Sobic002G269300--Sobic001G489500 Sobic001G088300 Sobic001G088300 Sobic002G269300--Sobic001G088300 Sobic001G295700 Sobic001G295700 Sobic002G269300--Sobic001G295700 Sobic002G269300--Sobic002G269400 Sobic002G269300--Sobic003G331500 Sobic002G386000 Sobic002G386000 Sobic002G269300--Sobic002G386000 Sobic003G290300 Sobic003G290300 Sobic003G331600--Sobic003G290300 Sobic010G135000 Sobic010G135000 Sobic003G331600--Sobic010G135000 Sobic002G405600 Sobic002G405600 Sobic003G331600--Sobic002G405600 Sobic003G271201 Sobic003G271201 Sobic003G331600--Sobic003G271201 Sobic001G037000 Sobic001G037000 Sobic003G331600--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G331600--Sobic009G023200 Sobic003G181500 Sobic003G181500 Sobic003G331600--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic003G331600--Sobic003G162700 Sobic002G245800 Sobic002G245800 Sobic003G331600--Sobic002G245800 Sobic002G269400--Sobic002G269300 Sobic002G269400--Sobic010G179800 Sobic002G269400--Sobic002G376000 Sobic004G110400 Sobic004G110400 Sobic002G269400--Sobic004G110400 Sobic008G018600 Sobic008G018600 Sobic002G269400--Sobic008G018600 Sobic002G269400--Sobic001G088300 Sobic002G269400--Sobic006G167800 Sobic001G526000 Sobic001G526000 Sobic002G269400--Sobic001G526000 Sobic005G063900 Sobic005G063900 Sobic002G269400--Sobic005G063900 Sobic010G179800--Sobic002G376000 Sobic010G179800--Sobic002G269400 Sobic001G024500 Sobic001G024500 Sobic010G179800--Sobic001G024500 Sobic008G002700 Sobic008G002700 Sobic010G179800--Sobic008G002700 Sobic007G220700 Sobic007G220700 Sobic010G179800--Sobic007G220700 Sobic004G083900 Sobic004G083900 Sobic010G179800--Sobic004G083900 Sobic010G179800--Sobic003G331500 Sobic001G435500 Sobic001G435500 Sobic010G179800--Sobic001G435500 Sobic009G110200 Sobic009G110200 Sobic010G179800--Sobic009G110200 Sobic009G181400--Sobic001G088300 Sobic001G510600 Sobic001G510600 Sobic009G181400--Sobic001G510600 Sobic003G102200 Sobic003G102200 Sobic009G181400--Sobic003G102200 Sobic009G181400--Sobic002G405600 Sobic003G202200 Sobic003G202200 Sobic009G181400--Sobic003G202200 Sobic003G110200 Sobic003G110200 Sobic009G181400--Sobic003G110200 Sobic002G092801 Sobic002G092801 Sobic009G181400--Sobic002G092801 Sobic009G181400--Sobic001G295700 Sobic001G204900 Sobic001G204900 Sobic009G181400--Sobic001G204900 Sobic004G228100--Sobic003G331500 Sobic003G013600 Sobic003G013600 Sobic004G228100--Sobic003G013600 Sobic009G080200 Sobic009G080200 Sobic004G228100--Sobic009G080200 Sobic004G228100--Sobic009G181400 Sobic003G123300 Sobic003G123300 Sobic004G228100--Sobic003G123300 Sobic001G011800 Sobic001G011800 Sobic004G228100--Sobic001G011800 Sobic004G228100--Sobic006G167800 Sobic002G123200 Sobic002G123200 Sobic004G228100--Sobic002G123200 Sobic007G181600 Sobic007G181600 Sobic004G228100--Sobic007G181600 Sobic006G167800--Sobic001G526000 Sobic003G296300 Sobic003G296300 Sobic006G167800--Sobic003G296300 Sobic006G167800--Sobic004G110400 Sobic006G167800--Sobic002G376000 Sobic010G157500 Sobic010G157500 Sobic006G167800--Sobic010G157500 Sobic001G093900 Sobic001G093900 Sobic006G167800--Sobic001G093900 Sobic009G067400 Sobic009G067400 Sobic006G167800--Sobic009G067400 Sobic001G195100 Sobic001G195100 Sobic006G167800--Sobic001G195100 Sobic001G144400 Sobic001G144400 Sobic006G167800--Sobic001G144400 Sobic002G376000--Sobic006G167800 Sobic001G288100 Sobic001G288100 Sobic002G376000--Sobic001G288100 Sobic002G376000--Sobic010G179800 Sobic002G376000--Sobic001G526000 Sobic002G376000--Sobic001G093900 Sobic002G376000--Sobic001G024500 Sobic002G376000--Sobic002G269400 Sobic002G376000--Sobic004G110400 Sobic001G075000 Sobic001G075000 Sobic002G376000--Sobic001G075000 Sobic003G244900 Sobic003G244900 Sobic002G328550--Sobic003G244900 Sobic003G067700 Sobic003G067700 Sobic002G328550--Sobic003G067700 Sobic004G149466 Sobic004G149466 Sobic002G328550--Sobic004G149466 Sobic002G328550--Sobic003G331500 Sobic006G221700 Sobic006G221700 Sobic002G328550--Sobic006G221700 Sobic003G002501 Sobic003G002501 Sobic002G328550--Sobic003G002501 Sobic005G158700 Sobic005G158700 Sobic002G328550--Sobic005G158700 Sobic004G017600 Sobic004G017600 Sobic002G328550--Sobic004G017600 Sobic005G158801 Sobic005G158801 Sobic002G328550--Sobic005G158801
Octagon: transcription factors


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