Gene annotation
Transcriptome id Sobic.004G309000.1
Synonym Sb04g034140, AMY1, ATAMY1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
alpha-amylase precursor, putative, expressed
UniProt C5XSU8
Pfam PF00128 PF07821
Panther DB PTHR10357 PTHR10357:SF148
NCBI CDD KOG0471; Alpha-amylase
KEGG Orthology K01176; AMY, amyA, alpha-amylase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0003824catalytic activity GO:0005509calcium ion binding GO:0004556alpha-amylase activity


Orthologs (automatic annotation)
TAIR AT4G25000 : alpha-amylase-like
RAP-DB (Rice) LOC_Os02g52710.1 : alpha-amylase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a022221 , Zm00025a014064 , Zm00025a046841 , Zm00025a005424
Brachypodium KQJ90515 , KQK01755
Barley HORVU6Hr1G078420.1 , HORVU6Hr1G078360.2 , HORVU6Hr1G078360.3 , HORVU6Hr1G078360.1 , HORVU7Hr1G091250.8 , HORVU7Hr1G091250.2 , HORVU7Hr1G091250.3 , HORVU7Hr1G091250.1 , HORVU7Hr1G091250.6 , HORVU7Hr1G091250.7 , HORVU7Hr1G091250.4 , HORVU7Hr1G091250.5 , HORVU0Hr1G032700.1 , HORVU6Hr1G080790.1 , HORVU6Hr1G080790.2 , HORVU7Hr1G091240.1 , HORVU6Hr1G078330.2 , HORVU0Hr1G032850.1 , HORVU0Hr1G032850.2 , HORVU0Hr1G032850.3 , HORVU0Hr1G032850.4 , HORVU0Hr1G032850.5 , HORVU7Hr1G091150.1 , HORVU7Hr1G091150.2 , HORVU6Hr1G078330.1
Wheat TraesCS5A02G464500 , TraesCS5B02G476000 , TraesCS6A02G319300 , TraesCS4B02G285400 , TraesCS6D02G313300 , TraesCS5B02G475700 , TraesCS4D02G284400 , TraesCS6B02G349700 , TraesCS6D02G313500 , TraesCS6A02G334100 , TraesCS7A02G384000 , TraesCS6B02G349800 , TraesCS7D02G379700 , TraesCS7B02G286700 , TraesCS6B02G364900 , TraesCS7A02G383900 , TraesCS6B02G364800 , TraesCS7D02G380400 , TraesCS7D02G380500 , TraesCS6D02G298500 , TraesCS6A02G334200 , TraesCS6B02G349500 , TraesCS4B02G285600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G279700 expressed protein -
2 Sobic.003G034400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger/CCCH transcription factor, putative, expressed -
3 Sobic.006G051100 expressed protein -
4 Sobic.002G421600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
5 Sobic.001G078200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.005G005650 - -
7 Sobic.010G179800 OsFBK16 - F-box domain and kelch repeat containing protein, expressed -
8 Sobic.003G331500 NHL25, putative, expressed -
9 Sobic.006G241400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
10 Sobic.004G325900 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
11 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
12 Sobic.007G158200 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
13 Sobic.001G015300 expressed protein -
14 Sobic.003G400200 plant-specific domain TIGR01615 family protein, expressed -
15 Sobic.006G241350 - -
16 Sobic.002G367700 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
17 Sobic.003G331600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsFBX168 - F-box domain containing protein, expressed -
18 Sobic.002G051300 flavin-containing monooxygenase family protein, putative, expressed -
19 Sobic.002G269300 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed -
20 Sobic.001G078900 MYB(PubMedID : 28944535)@MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic004G309000 Sobic004G309000 Sobic004G279700 Sobic004G279700 Sobic004G309000--Sobic004G279700 Sobic003G034400 Sobic003G034400 Sobic004G309000--Sobic003G034400 Sobic006G051100 Sobic006G051100 Sobic004G309000--Sobic006G051100 Sobic002G421600 Sobic002G421600 Sobic004G309000--Sobic002G421600 Sobic001G078200 Sobic001G078200 Sobic004G309000--Sobic001G078200 Sobic005G005650 Sobic005G005650 Sobic004G309000--Sobic005G005650 Sobic010G179800 Sobic010G179800 Sobic004G309000--Sobic010G179800 Sobic003G331500 Sobic003G331500 Sobic004G309000--Sobic003G331500 Sobic006G241400 Sobic006G241400 Sobic004G309000--Sobic006G241400 Sobic003G400200 Sobic003G400200 Sobic004G279700--Sobic003G400200 Sobic004G279700--Sobic006G241400 Sobic002G254200 Sobic002G254200 Sobic004G279700--Sobic002G254200 Sobic006G241350 Sobic006G241350 Sobic004G279700--Sobic006G241350 Sobic003G290300 Sobic003G290300 Sobic004G279700--Sobic003G290300 Sobic004G279700--Sobic002G421600 Sobic001G225200 Sobic001G225200 Sobic004G279700--Sobic001G225200 Sobic001G225300 Sobic001G225300 Sobic004G279700--Sobic001G225300 Sobic006G191600 Sobic006G191600 Sobic004G279700--Sobic006G191600 Sobic003G034400--Sobic002G421600 Sobic003G123300 Sobic003G123300 Sobic003G034400--Sobic003G123300 Sobic006G269200 Sobic006G269200 Sobic003G034400--Sobic006G269200 Sobic009G100800 Sobic009G100800 Sobic003G034400--Sobic009G100800 Sobic006G047000 Sobic006G047000 Sobic003G034400--Sobic006G047000 Sobic003G034400--Sobic001G078200 Sobic009G064000 Sobic009G064000 Sobic003G034400--Sobic009G064000 Sobic005G085600 Sobic005G085600 Sobic003G034400--Sobic005G085600 Sobic003G293900 Sobic003G293900 Sobic003G034400--Sobic003G293900 Sobic003G320600 Sobic003G320600 Sobic006G051100--Sobic003G320600 Sobic006G051100--Sobic003G123300 Sobic001G093600 Sobic001G093600 Sobic006G051100--Sobic001G093600 Sobic003G107300 Sobic003G107300 Sobic006G051100--Sobic003G107300 Sobic006G279700 Sobic006G279700 Sobic006G051100--Sobic006G279700 Sobic003G178700 Sobic003G178700 Sobic006G051100--Sobic003G178700 Sobic002G367700 Sobic002G367700 Sobic006G051100--Sobic002G367700 Sobic001G225500 Sobic001G225500 Sobic006G051100--Sobic001G225500 Sobic001G191200 Sobic001G191200 Sobic006G051100--Sobic001G191200 Sobic007G126100 Sobic007G126100 Sobic002G421600--Sobic007G126100 Sobic002G421600--Sobic006G269200 Sobic007G177100 Sobic007G177100 Sobic002G421600--Sobic007G177100 Sobic002G421600--Sobic002G254200 Sobic002G421600--Sobic003G034400 Sobic002G421600--Sobic003G293900 Sobic002G421600--Sobic001G225200 Sobic002G421600--Sobic006G047000 Sobic006G241600 Sobic006G241600 Sobic002G421600--Sobic006G241600 Sobic001G078200--Sobic001G191200 Sobic005G085200 Sobic005G085200 Sobic001G078200--Sobic005G085200 Sobic010G057300 Sobic010G057300 Sobic001G078200--Sobic010G057300 Sobic004G285800 Sobic004G285800 Sobic001G078200--Sobic004G285800 Sobic001G078200--Sobic005G085600 Sobic001G423100 Sobic001G423100 Sobic001G078200--Sobic001G423100 Sobic003G406700 Sobic003G406700 Sobic001G078200--Sobic003G406700 Sobic009G159700 Sobic009G159700 Sobic001G078200--Sobic009G159700 Sobic009G213400 Sobic009G213400 Sobic001G078200--Sobic009G213400 Sobic001G160700 Sobic001G160700 Sobic005G005650--Sobic001G160700 Sobic002G376000 Sobic002G376000 Sobic010G179800--Sobic002G376000 Sobic002G269400 Sobic002G269400 Sobic010G179800--Sobic002G269400 Sobic001G024500 Sobic001G024500 Sobic010G179800--Sobic001G024500 Sobic008G002700 Sobic008G002700 Sobic010G179800--Sobic008G002700 Sobic007G220700 Sobic007G220700 Sobic010G179800--Sobic007G220700 Sobic004G083900 Sobic004G083900 Sobic010G179800--Sobic004G083900 Sobic010G179800--Sobic003G331500 Sobic001G435500 Sobic001G435500 Sobic010G179800--Sobic001G435500 Sobic009G110200 Sobic009G110200 Sobic010G179800--Sobic009G110200 Sobic002G269300 Sobic002G269300 Sobic003G331500--Sobic002G269300 Sobic003G331600 Sobic003G331600 Sobic003G331500--Sobic003G331600 Sobic003G331500--Sobic002G269400 Sobic003G331500--Sobic010G179800 Sobic009G181400 Sobic009G181400 Sobic003G331500--Sobic009G181400 Sobic004G228100 Sobic004G228100 Sobic003G331500--Sobic004G228100 Sobic006G167800 Sobic006G167800 Sobic003G331500--Sobic006G167800 Sobic003G331500--Sobic002G376000 Sobic002G328550 Sobic002G328550 Sobic003G331500--Sobic002G328550 Sobic006G241400--Sobic004G279700 Sobic006G241400--Sobic006G241350 Sobic006G241400--Sobic003G400200 Sobic006G241400--Sobic006G241600 Sobic006G241400--Sobic002G421600 Sobic006G241400--Sobic007G126100 Sobic008G036900 Sobic008G036900 Sobic006G241400--Sobic008G036900 Sobic003G395400 Sobic003G395400 Sobic006G241400--Sobic003G395400 Sobic006G241400--Sobic002G254200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.