Gene annotation
Transcriptome id Sobic.007G158200.3,Sobic.007G158200.2,Sobic.007G158200.1
Synonym Sb07g023170
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt C5YML9 , A0A1Z5RB15 , A0A1Z5RA48
Pfam PF13561 PF00106
Panther DB PTHR24322 PTHR24322:SF315
NCBI CDD KOG1014; 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 KOG1199Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G50560 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os08g37130.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005443
Brachypodium KQJ98610
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G034400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger/CCCH transcription factor, putative, expressed -
2 Sobic.002G421600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
3 Sobic.002G242300 (54.2% identity with SbCCoAOMT/70.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
4 Sobic.004G279700 expressed protein -
5 Sobic.004G309000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
6 Sobic.010G044500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.010G039800 expressed protein -
8 Sobic.003G402300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@P21-Rho-binding domain containing protein, putative, expressed -
9 Sobic.001G505100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
10 Sobic.001G066100 CIN-like (ClassII) Subclade 14 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
11 Sobic.003G181600 early-responsive to dehydration protein-related, putative, expressed -
12 Sobic.009G238500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
13 Sobic.001G208300 Ser/Thr protein phosphatase family protein, putative, expressed -
14 Sobic.009G002600 polygalacturonase inhibitor precursor, putative, expressed -
15 Sobic.008G106800 isoflavone reductase, putative, expressed -
16 Sobic.004G260800 Fatty acid desaturase 2 (omega-6 fatty acid desaturase) FAD2 (Os)(PubMedID : 27208977)@Fatty acid desaturase 2 (omega-6 fatty acid desaturase) FAD2 (At)(PubMedID : 27208977)@fatty acid desaturase, putative, expressed K10256: omega-6 fatty acid desaturase / acyl-lipid omega-6 desaturase (Delta-12 desaturase)
17 Sobic.006G241400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
18 Sobic.002G254200 expressed protein -
19 Sobic.003G293900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@plant-specific domain TIGR01615 family protein, expressed -
20 Sobic.006G269200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stem-specific protein TSJT1, putative, expressed -


Gene co-expression network
sample Sobic007G158200 Sobic007G158200 Sobic003G034400 Sobic003G034400 Sobic007G158200--Sobic003G034400 Sobic002G421600 Sobic002G421600 Sobic007G158200--Sobic002G421600 Sobic002G242300 Sobic002G242300 Sobic007G158200--Sobic002G242300 Sobic004G279700 Sobic004G279700 Sobic007G158200--Sobic004G279700 Sobic004G309000 Sobic004G309000 Sobic007G158200--Sobic004G309000 Sobic010G044500 Sobic010G044500 Sobic007G158200--Sobic010G044500 Sobic010G039800 Sobic010G039800 Sobic007G158200--Sobic010G039800 Sobic003G402300 Sobic003G402300 Sobic007G158200--Sobic003G402300 Sobic001G505100 Sobic001G505100 Sobic007G158200--Sobic001G505100 Sobic003G034400--Sobic002G421600 Sobic003G123300 Sobic003G123300 Sobic003G034400--Sobic003G123300 Sobic006G269200 Sobic006G269200 Sobic003G034400--Sobic006G269200 Sobic009G100800 Sobic009G100800 Sobic003G034400--Sobic009G100800 Sobic006G047000 Sobic006G047000 Sobic003G034400--Sobic006G047000 Sobic001G078200 Sobic001G078200 Sobic003G034400--Sobic001G078200 Sobic009G064000 Sobic009G064000 Sobic003G034400--Sobic009G064000 Sobic005G085600 Sobic005G085600 Sobic003G034400--Sobic005G085600 Sobic003G293900 Sobic003G293900 Sobic003G034400--Sobic003G293900 Sobic007G126100 Sobic007G126100 Sobic002G421600--Sobic007G126100 Sobic002G421600--Sobic006G269200 Sobic007G177100 Sobic007G177100 Sobic002G421600--Sobic007G177100 Sobic002G254200 Sobic002G254200 Sobic002G421600--Sobic002G254200 Sobic002G421600--Sobic003G034400 Sobic002G421600--Sobic003G293900 Sobic001G225200 Sobic001G225200 Sobic002G421600--Sobic001G225200 Sobic002G421600--Sobic006G047000 Sobic006G241600 Sobic006G241600 Sobic002G421600--Sobic006G241600 Sobic001G397100 Sobic001G397100 Sobic002G242300--Sobic001G397100 Sobic009G021600 Sobic009G021600 Sobic002G242300--Sobic009G021600 Sobic003G300900 Sobic003G300900 Sobic002G242300--Sobic003G300900 Sobic006G261900 Sobic006G261900 Sobic002G242300--Sobic006G261900 Sobic009G152600 Sobic009G152600 Sobic002G242300--Sobic009G152600 Sobic002G123500 Sobic002G123500 Sobic002G242300--Sobic002G123500 Sobic006G245500 Sobic006G245500 Sobic002G242300--Sobic006G245500 Sobic003G109600 Sobic003G109600 Sobic002G242300--Sobic003G109600 Sobic004G262200 Sobic004G262200 Sobic002G242300--Sobic004G262200 Sobic003G400200 Sobic003G400200 Sobic004G279700--Sobic003G400200 Sobic006G241400 Sobic006G241400 Sobic004G279700--Sobic006G241400 Sobic004G279700--Sobic002G254200 Sobic006G241350 Sobic006G241350 Sobic004G279700--Sobic006G241350 Sobic003G290300 Sobic003G290300 Sobic004G279700--Sobic003G290300 Sobic004G279700--Sobic002G421600 Sobic004G279700--Sobic001G225200 Sobic001G225300 Sobic001G225300 Sobic004G279700--Sobic001G225300 Sobic006G191600 Sobic006G191600 Sobic004G279700--Sobic006G191600 Sobic004G309000--Sobic004G279700 Sobic004G309000--Sobic003G034400 Sobic006G051100 Sobic006G051100 Sobic004G309000--Sobic006G051100 Sobic004G309000--Sobic002G421600 Sobic004G309000--Sobic001G078200 Sobic005G005650 Sobic005G005650 Sobic004G309000--Sobic005G005650 Sobic010G179800 Sobic010G179800 Sobic004G309000--Sobic010G179800 Sobic003G331500 Sobic003G331500 Sobic004G309000--Sobic003G331500 Sobic004G309000--Sobic006G241400 Sobic004G293100 Sobic004G293100 Sobic010G044500--Sobic004G293100 Sobic002G007100 Sobic002G007100 Sobic010G044500--Sobic002G007100 Sobic003G015400 Sobic003G015400 Sobic010G044500--Sobic003G015400 Sobic001G107100 Sobic001G107100 Sobic010G044500--Sobic001G107100 Sobic001G202400 Sobic001G202400 Sobic010G044500--Sobic001G202400 Sobic006G171200 Sobic006G171200 Sobic010G044500--Sobic006G171200 Sobic004G298500 Sobic004G298500 Sobic010G044500--Sobic004G298500 Sobic002G233500 Sobic002G233500 Sobic010G044500--Sobic002G233500 Sobic003G181600 Sobic003G181600 Sobic010G044500--Sobic003G181600 Sobic002G263800 Sobic002G263800 Sobic010G039800--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic010G039800--Sobic007G095400 Sobic004G248800 Sobic004G248800 Sobic010G039800--Sobic004G248800 Sobic001G529000 Sobic001G529000 Sobic010G039800--Sobic001G529000 Sobic008G161800 Sobic008G161800 Sobic010G039800--Sobic008G161800 Sobic009G016201 Sobic009G016201 Sobic010G039800--Sobic009G016201 Sobic002G218000 Sobic002G218000 Sobic010G039800--Sobic002G218000 Sobic002G373800 Sobic002G373800 Sobic010G039800--Sobic002G373800 Sobic009G036900 Sobic009G036900 Sobic010G039800--Sobic009G036900 Sobic006G157500 Sobic006G157500 Sobic003G402300--Sobic006G157500 Sobic003G402300--Sobic007G177100 Sobic004G164500 Sobic004G164500 Sobic003G402300--Sobic004G164500 Sobic002G353800 Sobic002G353800 Sobic003G402300--Sobic002G353800 Sobic002G339100 Sobic002G339100 Sobic003G402300--Sobic002G339100 Sobic001G311000 Sobic001G311000 Sobic003G402300--Sobic001G311000 Sobic009G159200 Sobic009G159200 Sobic003G402300--Sobic009G159200 Sobic007G090463 Sobic007G090463 Sobic003G402300--Sobic007G090463 Sobic001G372100 Sobic001G372100 Sobic003G402300--Sobic001G372100 Sobic004G345500 Sobic004G345500 Sobic001G505100--Sobic004G345500 Sobic004G152400 Sobic004G152400 Sobic001G505100--Sobic004G152400 Sobic004G103800 Sobic004G103800 Sobic001G505100--Sobic004G103800 Sobic007G019000 Sobic007G019000 Sobic001G505100--Sobic007G019000 Sobic010G230700 Sobic010G230700 Sobic001G505100--Sobic010G230700 Sobic007G018300 Sobic007G018300 Sobic001G505100--Sobic007G018300 Sobic002G330000 Sobic002G330000 Sobic001G505100--Sobic002G330000 Sobic003G344600 Sobic003G344600 Sobic001G505100--Sobic003G344600 Sobic002G115000 Sobic002G115000 Sobic001G505100--Sobic002G115000
Octagon: transcription factors


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