Gene annotation
Transcriptome id Sobic.001G066100.2,Sobic.001G066100.1
Synonym TCP-like gene;TCP2-1;SbTCP1;SbTCP1, ATTCP24, Sb01g006020, TCP24
Functional annotation CIN-like (ClassII) Subclade 14 TCP (PubMedID : 21444336)
basic helix-loop-helix (bHLH) transcription factor (PubMedID : 23915383)
"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)." (PubMedID : 27917941)
"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)" (PubMedID : 28383054)
TCP family transcription factor, putative, expressed
UniProt C5WY77
Pfam PF03634
Panther DB PTHR31072 PTHR31072:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18390 : TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
RAP-DB (Rice) LOC_Os03g57190.1 : TCP family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a016635 , Zm00025a021020 , Zm00025a045028 , Zm00025a016162 , Zm00025a008470 , Zm00025a044209
Brachypodium KQJ83685 , KQK21060 , KQK12863
Barley HORVU1Hr1G077080.1 , HORVU1Hr1G077080.2 , HORVU5Hr1G103400.1 , HORVU5Hr1G103400.3 , HORVU5Hr1G103400.2 , HORVU2Hr1G060120.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G032100 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
2 Sobic.001G216600 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.003G328800 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
4 Sobic.005G085600 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -
5 Sobic.008G136000 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
6 Sobic.009G164900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
7 Sobic.009G183500 expressed protein -
8 Sobic.008G106800 isoflavone reductase, putative, expressed -
9 Sobic.004G077000 expressed protein -
10 Sobic.005G012000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
11 Sobic.009G214600 possible lysine decarboxylase domain containing protein, expressed -
12 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2
13 Sobic.001G179000 DNA-directed RNA polymerase subunit, putative, expressed K03014: RPB6, DNA-directed RNA polymerases I, II, and III subunit RPABC2
14 Sobic.001G082300 cytochrome P450, putative, expressed -
15 Sobic.007G007900 mago nashi, putative, expressed K12877: protein mago nashi
16 Sobic.006G213100 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
17 Sobic.010G173900 expressed protein -
18 Sobic.010G077600 gb protein, putative, expressed -
19 Sobic.002G157200 expressed protein -
20 Sobic.007G224900 RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2


Gene co-expression network
sample Sobic001G066100 Sobic001G066100 Sobic001G032100 Sobic001G032100 Sobic001G066100--Sobic001G032100 Sobic001G216600 Sobic001G216600 Sobic001G066100--Sobic001G216600 Sobic003G328800 Sobic003G328800 Sobic001G066100--Sobic003G328800 Sobic005G085600 Sobic005G085600 Sobic001G066100--Sobic005G085600 Sobic008G136000 Sobic008G136000 Sobic001G066100--Sobic008G136000 Sobic009G164900 Sobic009G164900 Sobic001G066100--Sobic009G164900 Sobic009G183500 Sobic009G183500 Sobic001G066100--Sobic009G183500 Sobic008G106800 Sobic008G106800 Sobic001G066100--Sobic008G106800 Sobic004G077000 Sobic004G077000 Sobic001G066100--Sobic004G077000 Sobic003G296600 Sobic003G296600 Sobic001G032100--Sobic003G296600 Sobic001G032100--Sobic005G085600 Sobic001G247400 Sobic001G247400 Sobic001G032100--Sobic001G247400 Sobic006G194150 Sobic006G194150 Sobic001G032100--Sobic006G194150 Sobic004G221900 Sobic004G221900 Sobic001G032100--Sobic004G221900 Sobic003G034500 Sobic003G034500 Sobic001G032100--Sobic003G034500 Sobic003G293900 Sobic003G293900 Sobic001G032100--Sobic003G293900 Sobic001G225100 Sobic001G225100 Sobic001G032100--Sobic001G225100 Sobic001G032100--Sobic009G183500 Sobic007G195400 Sobic007G195400 Sobic001G216600--Sobic007G195400 Sobic001G309100 Sobic001G309100 Sobic001G216600--Sobic001G309100 Sobic001G216600--Sobic009G164900 Sobic003G437500 Sobic003G437500 Sobic001G216600--Sobic003G437500 Sobic004G119000 Sobic004G119000 Sobic001G216600--Sobic004G119000 Sobic004G150400 Sobic004G150400 Sobic001G216600--Sobic004G150400 Sobic002G334600 Sobic002G334600 Sobic001G216600--Sobic002G334600 Sobic002G272800 Sobic002G272800 Sobic001G216600--Sobic002G272800 Sobic004G349100 Sobic004G349100 Sobic001G216600--Sobic004G349100 Sobic006G213100 Sobic006G213100 Sobic003G328800--Sobic006G213100 Sobic005G012000 Sobic005G012000 Sobic003G328800--Sobic005G012000 Sobic004G164650 Sobic004G164650 Sobic003G328800--Sobic004G164650 Sobic003G397300 Sobic003G397300 Sobic003G328800--Sobic003G397300 Sobic008G126200 Sobic008G126200 Sobic003G328800--Sobic008G126200 Sobic003G380500 Sobic003G380500 Sobic003G328800--Sobic003G380500 Sobic001G082300 Sobic001G082300 Sobic003G328800--Sobic001G082300 Sobic003G328800--Sobic008G136000 Sobic003G044900 Sobic003G044900 Sobic003G328800--Sobic003G044900 Sobic005G085200 Sobic005G085200 Sobic005G085600--Sobic005G085200 Sobic007G189800 Sobic007G189800 Sobic005G085600--Sobic007G189800 Sobic005G085600--Sobic001G032100 Sobic009G180200 Sobic009G180200 Sobic005G085600--Sobic009G180200 Sobic001G363100 Sobic001G363100 Sobic005G085600--Sobic001G363100 Sobic009G159700 Sobic009G159700 Sobic005G085600--Sobic009G159700 Sobic004G199600 Sobic004G199600 Sobic005G085600--Sobic004G199600 Sobic009G078500 Sobic009G078500 Sobic005G085600--Sobic009G078500 Sobic010G057300 Sobic010G057300 Sobic005G085600--Sobic010G057300 Sobic001G428400 Sobic001G428400 Sobic008G136000--Sobic001G428400 Sobic002G270300 Sobic002G270300 Sobic008G136000--Sobic002G270300 Sobic003G024800 Sobic003G024800 Sobic008G136000--Sobic003G024800 Sobic008G136000--Sobic003G328800 Sobic008G136000--Sobic004G349100 Sobic008G136000--Sobic004G077000 Sobic001G512600 Sobic001G512600 Sobic008G136000--Sobic001G512600 Sobic001G420700 Sobic001G420700 Sobic008G136000--Sobic001G420700 Sobic010G163900 Sobic010G163900 Sobic008G136000--Sobic010G163900 Sobic002G007200 Sobic002G007200 Sobic009G164900--Sobic002G007200 Sobic009G164900--Sobic003G380500 Sobic009G164900--Sobic001G216600 Sobic003G356200 Sobic003G356200 Sobic009G164900--Sobic003G356200 Sobic001G217100 Sobic001G217100 Sobic009G164900--Sobic001G217100 Sobic004G229100 Sobic004G229100 Sobic009G164900--Sobic004G229100 Sobic009G011500 Sobic009G011500 Sobic009G164900--Sobic009G011500 Sobic009G164900--Sobic007G195400 Sobic002G157200 Sobic002G157200 Sobic009G164900--Sobic002G157200 Sobic007G023700 Sobic007G023700 Sobic009G183500--Sobic007G023700 Sobic003G093600 Sobic003G093600 Sobic009G183500--Sobic003G093600 Sobic002G221900 Sobic002G221900 Sobic009G183500--Sobic002G221900 Sobic004G188300 Sobic004G188300 Sobic009G183500--Sobic004G188300 Sobic002G039500 Sobic002G039500 Sobic009G183500--Sobic002G039500 Sobic009G183500--Sobic003G034500 Sobic009G183500--Sobic008G126200 Sobic004G143700 Sobic004G143700 Sobic009G183500--Sobic004G143700 Sobic006G257900 Sobic006G257900 Sobic009G183500--Sobic006G257900 Sobic004G164500 Sobic004G164500 Sobic008G106800--Sobic004G164500 Sobic001G471900 Sobic001G471900 Sobic008G106800--Sobic001G471900 Sobic001G056700 Sobic001G056700 Sobic008G106800--Sobic001G056700 Sobic009G065000 Sobic009G065000 Sobic008G106800--Sobic009G065000 Sobic003G273100 Sobic003G273100 Sobic008G106800--Sobic003G273100 Sobic003G137400 Sobic003G137400 Sobic008G106800--Sobic003G137400 Sobic001G311000 Sobic001G311000 Sobic008G106800--Sobic001G311000 Sobic002G278300 Sobic002G278300 Sobic008G106800--Sobic002G278300 Sobic001G230700 Sobic001G230700 Sobic008G106800--Sobic001G230700 Sobic005G229000 Sobic005G229000 Sobic004G077000--Sobic005G229000 Sobic004G077000--Sobic001G428400 Sobic002G362300 Sobic002G362300 Sobic004G077000--Sobic002G362300 Sobic003G442000 Sobic003G442000 Sobic004G077000--Sobic003G442000 Sobic008G034600 Sobic008G034600 Sobic004G077000--Sobic008G034600 Sobic004G077000--Sobic002G157200 Sobic009G225200 Sobic009G225200 Sobic004G077000--Sobic009G225200 Sobic005G009200 Sobic005G009200 Sobic004G077000--Sobic005G009200 Sobic007G224900 Sobic007G224900 Sobic004G077000--Sobic007G224900
Octagon: transcription factors


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