Gene annotation
Transcriptome id Sobic.004G260800.1
Synonym FAD2, Sb04g029920,
Functional annotation Fatty acid desaturase 2 (omega-6 fatty acid desaturase) FAD2 (Os) (PubMedID : 27208977)
Fatty acid desaturase 2 (omega-6 fatty acid desaturase) FAD2 (At) (PubMedID : 27208977)
fatty acid desaturase, putative, expressed
UniProt A0A194YRR5 , B1PHV2
Pfam PF11960 PF00487
Panther DB PTHR32100 PTHR32100:SF13
NCBI CDD -
KEGG Orthology K10256; omega-6 fatty acid desaturase / acyl-lipid omega-6 desaturase (Delta-12 desaturase)
Gene Ontology GO:0016717; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water GO:0006629lipid metabolic process


Orthologs (automatic annotation)
TAIR AT3G12120 : fatty acid desaturase 2
RAP-DB (Rice) LOC_Os02g48560.1 : fatty acid desaturase, putative, expressed
MaizeGDB (Corn) Zm00025a032528 , Zm00025a021811 , Zm00025a021812
Brachypodium KQK01023 , KQK01022 , KQK05878 , KQK01024 , KQK01025 , KQK01026
Barley HORVU6Hr1G070540.1 , HORVU6Hr1G070550.1 , HORVU6Hr1G070550.2 , HORVU6Hr1G070420.1 , HORVU6Hr1G070420.2
Wheat TraesCS6A02G280100 , TraesCS6B02G309300 , TraesCS6B02G309400 , TraesCS1A02G181300 , TraesCS6B02G309500
Populus -


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cDNA sequences
Sobic.004G260800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G035501 - -
2 Sobic.003G404900 regulatory protein, putative, expressed -
3 Sobic.004G026700 down-regulated TF in developmental senescence(PubMedID : 27586543)@transcription factor, putative, expressed K09060: plant G-box-binding factor
4 Sobic.001G361700 expressed protein -
5 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.009G077200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
7 Sobic.002G285375 - -
8 Sobic.001G217700 possible lysine decarboxylase domain containing protein, expressed -
9 Sobic.006G060200 basic proline-rich protein, putative, expressed -
10 Sobic.005G063700 OsFBW2 - F-box domain and WD40 repeat containing protein, expressed -
11 Sobic.004G218500 expressed protein -
12 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
13 Sobic.010G133200 - -
14 Sobic.006G222700 OsCHL Chloroplastic lipocalin, expressed -
15 Sobic.004G175600 tetratricopeptide repeat domain containing protein, expressed -
16 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
17 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
18 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
19 Sobic.002G000500 isoflavone reductase, putative, expressed -
20 Sobic.008G104801 - -


Gene co-expression network
sample Sobic004G260800 Sobic004G260800 Sobic008G035501 Sobic008G035501 Sobic004G260800--Sobic008G035501 Sobic003G404900 Sobic003G404900 Sobic004G260800--Sobic003G404900 Sobic004G026700 Sobic004G026700 Sobic004G260800--Sobic004G026700 Sobic001G361700 Sobic001G361700 Sobic004G260800--Sobic001G361700 Sobic006G011100 Sobic006G011100 Sobic004G260800--Sobic006G011100 Sobic009G077200 Sobic009G077200 Sobic004G260800--Sobic009G077200 Sobic002G285375 Sobic002G285375 Sobic004G260800--Sobic002G285375 Sobic001G217700 Sobic001G217700 Sobic004G260800--Sobic001G217700 Sobic006G060200 Sobic006G060200 Sobic004G260800--Sobic006G060200 Sobic008G035501--Sobic004G260800 Sobic007G171950 Sobic007G171950 Sobic008G035501--Sobic007G171950 Sobic001G266400 Sobic001G266400 Sobic008G035501--Sobic001G266400 Sobic005G063700 Sobic005G063700 Sobic008G035501--Sobic005G063700 Sobic010G068400 Sobic010G068400 Sobic008G035501--Sobic010G068400 Sobic004G080200 Sobic004G080200 Sobic008G035501--Sobic004G080200 Sobic002G000700 Sobic002G000700 Sobic008G035501--Sobic002G000700 Sobic002G122600 Sobic002G122600 Sobic008G035501--Sobic002G122600 Sobic003G445100 Sobic003G445100 Sobic008G035501--Sobic003G445100 Sobic002G000500 Sobic002G000500 Sobic003G404900--Sobic002G000500 Sobic003G404900--Sobic001G361700 Sobic004G035601 Sobic004G035601 Sobic003G404900--Sobic004G035601 Sobic006G051300 Sobic006G051300 Sobic003G404900--Sobic006G051300 Sobic008G016250 Sobic008G016250 Sobic003G404900--Sobic008G016250 Sobic010G108401 Sobic010G108401 Sobic003G404900--Sobic010G108401 Sobic003G404900--Sobic004G026700 Sobic010G183032 Sobic010G183032 Sobic003G404900--Sobic010G183032 Sobic007G171600 Sobic007G171600 Sobic003G404900--Sobic007G171600 Sobic004G026700--Sobic002G000500 Sobic001G274600 Sobic001G274600 Sobic004G026700--Sobic001G274600 Sobic004G026700--Sobic001G361700 Sobic002G040100 Sobic002G040100 Sobic004G026700--Sobic002G040100 Sobic004G026700--Sobic006G011100 Sobic003G199800 Sobic003G199800 Sobic004G026700--Sobic003G199800 Sobic004G026700--Sobic004G035601 Sobic003G209800 Sobic003G209800 Sobic004G026700--Sobic003G209800 Sobic001G338700 Sobic001G338700 Sobic004G026700--Sobic001G338700 Sobic001G361700--Sobic004G026700 Sobic001G361700--Sobic002G000500 Sobic001G068400 Sobic001G068400 Sobic001G361700--Sobic001G068400 Sobic001G361700--Sobic010G183032 Sobic001G361700--Sobic002G040100 Sobic001G361700--Sobic010G108401 Sobic010G183100 Sobic010G183100 Sobic001G361700--Sobic010G183100 Sobic001G361700--Sobic006G011100 Sobic010G038500 Sobic010G038500 Sobic001G361700--Sobic010G038500 Sobic010G109500 Sobic010G109500 Sobic006G011100--Sobic010G109500 Sobic006G011100--Sobic002G000500 Sobic006G011100--Sobic001G274600 Sobic006G011100--Sobic003G209800 Sobic006G234100 Sobic006G234100 Sobic006G011100--Sobic006G234100 Sobic003G052500 Sobic003G052500 Sobic006G011100--Sobic003G052500 Sobic002G339200 Sobic002G339200 Sobic006G011100--Sobic002G339200 Sobic001G448400 Sobic001G448400 Sobic006G011100--Sobic001G448400 Sobic006G011100--Sobic002G040100 Sobic009G077200--Sobic001G274600 Sobic009G077200--Sobic010G108401 Sobic005G042100 Sobic005G042100 Sobic009G077200--Sobic005G042100 Sobic009G077200--Sobic010G183032 Sobic002G082950 Sobic002G082950 Sobic009G077200--Sobic002G082950 Sobic004G071800 Sobic004G071800 Sobic009G077200--Sobic004G071800 Sobic008G038300 Sobic008G038300 Sobic009G077200--Sobic008G038300 Sobic002G352301 Sobic002G352301 Sobic009G077200--Sobic002G352301 Sobic005G152600 Sobic005G152600 Sobic009G077200--Sobic005G152600 Sobic002G285375--Sobic006G011100 Sobic002G285375--Sobic004G026700 Sobic002G285375--Sobic001G274600 Sobic002G285375--Sobic002G000500 Sobic002G285375--Sobic001G068400 Sobic009G243500 Sobic009G243500 Sobic002G285375--Sobic009G243500 Sobic002G285375--Sobic003G209800 Sobic002G285375--Sobic001G361700 Sobic002G285375--Sobic010G109500 Sobic001G217700--Sobic006G060200 Sobic002G104000 Sobic002G104000 Sobic001G217700--Sobic002G104000 Sobic006G249050 Sobic006G249050 Sobic001G217700--Sobic006G249050 Sobic002G376700 Sobic002G376700 Sobic001G217700--Sobic002G376700 Sobic003G110700 Sobic003G110700 Sobic001G217700--Sobic003G110700 Sobic001G269300 Sobic001G269300 Sobic001G217700--Sobic001G269300 Sobic006G102400 Sobic006G102400 Sobic001G217700--Sobic006G102400 Sobic005G036600 Sobic005G036600 Sobic001G217700--Sobic005G036600 Sobic010G246600 Sobic010G246600 Sobic001G217700--Sobic010G246600 Sobic006G060200--Sobic001G269300 Sobic002G215000 Sobic002G215000 Sobic006G060200--Sobic002G215000 Sobic006G060200--Sobic001G217700 Sobic008G131700 Sobic008G131700 Sobic006G060200--Sobic008G131700 Sobic001G233400 Sobic001G233400 Sobic006G060200--Sobic001G233400 Sobic006G060200--Sobic005G036600 Sobic003G137100 Sobic003G137100 Sobic006G060200--Sobic003G137100 Sobic001G495300 Sobic001G495300 Sobic006G060200--Sobic001G495300 Sobic005G084000 Sobic005G084000 Sobic006G060200--Sobic005G084000
Octagon: transcription factors


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