Gene annotation
Transcriptome id Sobic.004G218500.10,Sobic.004G218500.5,Sobic.004G218500.7,Sobic.004G218500.8,Sobic.004G218500.6,Sobic.004G218500.11,Sobic.004G218500.9,Sobic.004G218500.4
Synonym MEE37, Sb04g026350, EDA6
Functional annotation expressed protein
UniProt C5XXR9
Pfam -
Panther DB PTHR34657 PTHR34657:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23440 : embryo sac development arrest 6
RAP-DB (Rice) LOC_Os02g40820.1,LOC_Os02g40820.2 : expressed protein
MaizeGDB (Corn) Zm00025a032003 , Zm00025a021116
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G114100 expressed protein -
2 Sobic.008G101500 powdery mildew resistance protein PM3b, putative, expressed -
3 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.010G091200 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.009G085100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA3 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
6 Sobic.008G118000 Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C11 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
7 Sobic.006G214400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
8 Sobic.007G179750 - -
9 Sobic.004G175600 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.001G485600 DAG protein, chloroplast precursor, putative, expressed -
11 Sobic.008G183200 LOL3, putative, expressed -
12 Sobic.005G127000 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
13 Sobic.007G201400 pentatricopeptide, putative, expressed -
14 Sobic.004G147200 - -
15 Sobic.001G324400 thymidine kinase, putative, expressed K00857: tdk, thymidine kinase
16 Sobic.003G245900 membrane associated DUF588 domain containing protein, putative, expressed -
17 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.008G151000 wall-associated receptor kinase 3 precursor, putative, expressed -
19 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
20 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein


Gene co-expression network
sample Sobic004G218500 Sobic004G218500 Sobic003G114100 Sobic003G114100 Sobic004G218500--Sobic003G114100 Sobic008G101500 Sobic008G101500 Sobic004G218500--Sobic008G101500 Sobic003G170200 Sobic003G170200 Sobic004G218500--Sobic003G170200 Sobic010G091200 Sobic010G091200 Sobic004G218500--Sobic010G091200 Sobic009G085100 Sobic009G085100 Sobic004G218500--Sobic009G085100 Sobic008G118000 Sobic008G118000 Sobic004G218500--Sobic008G118000 Sobic006G214400 Sobic006G214400 Sobic004G218500--Sobic006G214400 Sobic007G179750 Sobic007G179750 Sobic004G218500--Sobic007G179750 Sobic004G175600 Sobic004G175600 Sobic004G218500--Sobic004G175600 Sobic002G114700 Sobic002G114700 Sobic003G114100--Sobic002G114700 Sobic001G076200 Sobic001G076200 Sobic003G114100--Sobic001G076200 Sobic008G078900 Sobic008G078900 Sobic003G114100--Sobic008G078900 Sobic010G052500 Sobic010G052500 Sobic003G114100--Sobic010G052500 Sobic003G014000 Sobic003G014000 Sobic003G114100--Sobic003G014000 Sobic007G201400 Sobic007G201400 Sobic003G114100--Sobic007G201400 Sobic008G131700 Sobic008G131700 Sobic003G114100--Sobic008G131700 Sobic006G273400 Sobic006G273400 Sobic003G114100--Sobic006G273400 Sobic001G514100 Sobic001G514100 Sobic003G114100--Sobic001G514100 Sobic008G101500--Sobic001G076200 Sobic004G249500 Sobic004G249500 Sobic008G101500--Sobic004G249500 Sobic005G127000 Sobic005G127000 Sobic008G101500--Sobic005G127000 Sobic008G101500--Sobic003G114100 Sobic008G101500--Sobic007G179750 Sobic003G178700 Sobic003G178700 Sobic008G101500--Sobic003G178700 Sobic001G093600 Sobic001G093600 Sobic008G101500--Sobic001G093600 Sobic001G217700 Sobic001G217700 Sobic008G101500--Sobic001G217700 Sobic008G101500--Sobic008G118000 Sobic001G102500 Sobic001G102500 Sobic003G170200--Sobic001G102500 Sobic007G205600 Sobic007G205600 Sobic003G170200--Sobic007G205600 Sobic003G170200--Sobic008G078900 Sobic003G162800 Sobic003G162800 Sobic003G170200--Sobic003G162800 Sobic003G286300 Sobic003G286300 Sobic003G170200--Sobic003G286300 Sobic003G170200--Sobic001G514100 Sobic001G375000 Sobic001G375000 Sobic003G170200--Sobic001G375000 Sobic001G450600 Sobic001G450600 Sobic003G170200--Sobic001G450600 Sobic003G128400 Sobic003G128400 Sobic003G170200--Sobic003G128400 Sobic005G184300 Sobic005G184300 Sobic010G091200--Sobic005G184300 Sobic004G040600 Sobic004G040600 Sobic010G091200--Sobic004G040600 Sobic002G065200 Sobic002G065200 Sobic010G091200--Sobic002G065200 Sobic010G091200--Sobic003G128400 Sobic002G297400 Sobic002G297400 Sobic010G091200--Sobic002G297400 Sobic003G439000 Sobic003G439000 Sobic010G091200--Sobic003G439000 Sobic003G265500 Sobic003G265500 Sobic010G091200--Sobic003G265500 Sobic010G091200--Sobic001G514100 Sobic006G256600 Sobic006G256600 Sobic010G091200--Sobic006G256600 Sobic009G007800 Sobic009G007800 Sobic009G085100--Sobic009G007800 Sobic009G085100--Sobic002G114700 Sobic004G241500 Sobic004G241500 Sobic009G085100--Sobic004G241500 Sobic010G236900 Sobic010G236900 Sobic009G085100--Sobic010G236900 Sobic009G085100--Sobic004G218500 Sobic001G010800 Sobic001G010800 Sobic009G085100--Sobic001G010800 Sobic001G037500 Sobic001G037500 Sobic009G085100--Sobic001G037500 Sobic001G384800 Sobic001G384800 Sobic009G085100--Sobic001G384800 Sobic009G127400 Sobic009G127400 Sobic009G085100--Sobic009G127400 Sobic008G118000--Sobic006G214400 Sobic008G118000--Sobic008G101500 Sobic008G118000--Sobic003G178700 Sobic001G491200 Sobic001G491200 Sobic008G118000--Sobic001G491200 Sobic008G118000--Sobic001G217700 Sobic008G118000--Sobic002G114700 Sobic007G076700 Sobic007G076700 Sobic008G118000--Sobic007G076700 Sobic009G085400 Sobic009G085400 Sobic008G118000--Sobic009G085400 Sobic004G315800 Sobic004G315800 Sobic008G118000--Sobic004G315800 Sobic006G214400--Sobic002G114700 Sobic006G214400--Sobic009G085400 Sobic006G214400--Sobic008G118000 Sobic006G214400--Sobic001G076200 Sobic004G147200 Sobic004G147200 Sobic006G214400--Sobic004G147200 Sobic005G046500 Sobic005G046500 Sobic006G214400--Sobic005G046500 Sobic006G214400--Sobic007G076700 Sobic003G174800 Sobic003G174800 Sobic006G214400--Sobic003G174800 Sobic008G000900 Sobic008G000900 Sobic006G214400--Sobic008G000900 Sobic007G179750--Sobic001G093600 Sobic006G273000 Sobic006G273000 Sobic007G179750--Sobic006G273000 Sobic003G107300 Sobic003G107300 Sobic007G179750--Sobic003G107300 Sobic007G014600 Sobic007G014600 Sobic007G179750--Sobic007G014600 Sobic001G005500 Sobic001G005500 Sobic007G179750--Sobic001G005500 Sobic007G179750--Sobic008G101500 Sobic010G246600 Sobic010G246600 Sobic007G179750--Sobic010G246600 Sobic007G191900 Sobic007G191900 Sobic007G179750--Sobic007G191900 Sobic008G152200 Sobic008G152200 Sobic007G179750--Sobic008G152200 Sobic001G063800 Sobic001G063800 Sobic004G175600--Sobic001G063800 Sobic001G296400 Sobic001G296400 Sobic004G175600--Sobic001G296400 Sobic007G095500 Sobic007G095500 Sobic004G175600--Sobic007G095500 Sobic004G175600--Sobic003G174800 Sobic004G208600 Sobic004G208600 Sobic004G175600--Sobic004G208600 Sobic004G225600 Sobic004G225600 Sobic004G175600--Sobic004G225600 Sobic001G428000 Sobic001G428000 Sobic004G175600--Sobic001G428000 Sobic004G019500 Sobic004G019500 Sobic004G175600--Sobic004G019500 Sobic007G203200 Sobic007G203200 Sobic004G175600--Sobic007G203200
Octagon: transcription factors


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