Gene annotation
Transcriptome id Sobic.009G085100.1,Sobic.009G085100.2
Synonym SHY2, auxin/indole-3-acetic acid (Aux/IAA), Sb09g007890, IAA3, SbIAA21
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments" (PubMedID : 20499123)
OsIAA3 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt A0A1B6P7B8 , A0A1Z5R2A5
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF17
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G04730 : phytochrome-associated protein 2,indoleacetic acid-induced protein 16
RAP-DB (Rice) LOC_Os05g14180.1 : OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a043205 , Zm00025a037563
Brachypodium KQK03422 , KQK06972
Barley HORVU3Hr1G031460.9 , HORVU3Hr1G031460.8 , HORVU3Hr1G031460.11 , HORVU3Hr1G031460.10 , HORVU3Hr1G031460.6 , HORVU3Hr1G031460.4 , HORVU3Hr1G031460.3 , HORVU3Hr1G031460.2 , HORVU3Hr1G031460.1
Wheat TraesCS3B02G181500
Populus -


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cDNA sequences
Sobic.009G085100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G007800 TruB family pseudouridylate synthase, putative, expressed K03177: truB, PUS4, tRNA pseudouridine55 synthase
2 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G241500 expressed protein -
4 Sobic.010G236900 expressed protein -
5 Sobic.004G218500 expressed protein -
6 Sobic.001G010800 methionyl-tRNA synthetase, putative, expressed -
7 Sobic.001G037500 expressed protein -
8 Sobic.001G384800 expressed protein -
9 Sobic.009G127400 PAC, putative, expressed -
10 Sobic.009G085400 acyl-activating enzyme 14, putative, expressed -
11 Sobic.008G118000 Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C11 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
12 Sobic.001G489800 HNH endonuclease domain-containing protein, putative, expressed -
13 Sobic.007G069400 pentatricopeptide, putative, expressed -
14 Sobic.010G006400 zinc finger, C3HC4 type domain containing protein, expressed K16281: RING-H2 zinc finger protein RHA1
15 Sobic.004G208600 glycine-rich protein, putative, expressed -
16 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
17 Sobic.004G345600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
18 Sobic.007G076700 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase
19 Sobic.007G002000 heavy metal-associated domain containing protein, expressed -
20 Sobic.004G174400 ZOS2-09 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic009G085100 Sobic009G085100 Sobic009G007800 Sobic009G007800 Sobic009G085100--Sobic009G007800 Sobic002G114700 Sobic002G114700 Sobic009G085100--Sobic002G114700 Sobic004G241500 Sobic004G241500 Sobic009G085100--Sobic004G241500 Sobic010G236900 Sobic010G236900 Sobic009G085100--Sobic010G236900 Sobic004G218500 Sobic004G218500 Sobic009G085100--Sobic004G218500 Sobic001G010800 Sobic001G010800 Sobic009G085100--Sobic001G010800 Sobic001G037500 Sobic001G037500 Sobic009G085100--Sobic001G037500 Sobic001G384800 Sobic001G384800 Sobic009G085100--Sobic001G384800 Sobic009G127400 Sobic009G127400 Sobic009G085100--Sobic009G127400 Sobic001G022500 Sobic001G022500 Sobic009G007800--Sobic001G022500 Sobic002G336800 Sobic002G336800 Sobic009G007800--Sobic002G336800 Sobic003G434700 Sobic003G434700 Sobic009G007800--Sobic003G434700 Sobic009G007800--Sobic002G114700 Sobic003G040000 Sobic003G040000 Sobic009G007800--Sobic003G040000 Sobic004G019500 Sobic004G019500 Sobic009G007800--Sobic004G019500 Sobic009G085400 Sobic009G085400 Sobic009G007800--Sobic009G085400 Sobic007G069400 Sobic007G069400 Sobic009G007800--Sobic007G069400 Sobic004G035000 Sobic004G035000 Sobic009G007800--Sobic004G035000 Sobic008G078900 Sobic008G078900 Sobic002G114700--Sobic008G078900 Sobic003G114100 Sobic003G114100 Sobic002G114700--Sobic003G114100 Sobic006G273400 Sobic006G273400 Sobic002G114700--Sobic006G273400 Sobic001G076200 Sobic001G076200 Sobic002G114700--Sobic001G076200 Sobic003G110700 Sobic003G110700 Sobic002G114700--Sobic003G110700 Sobic002G114700--Sobic007G069400 Sobic006G214400 Sobic006G214400 Sobic002G114700--Sobic006G214400 Sobic002G114700--Sobic004G035000 Sobic007G205600 Sobic007G205600 Sobic002G114700--Sobic007G205600 Sobic007G052900 Sobic007G052900 Sobic004G241500--Sobic007G052900 Sobic004G113800 Sobic004G113800 Sobic004G241500--Sobic004G113800 Sobic004G315800 Sobic004G315800 Sobic004G241500--Sobic004G315800 Sobic004G241500--Sobic004G035000 Sobic004G174400 Sobic004G174400 Sobic004G241500--Sobic004G174400 Sobic009G140500 Sobic009G140500 Sobic004G241500--Sobic009G140500 Sobic006G191400 Sobic006G191400 Sobic004G241500--Sobic006G191400 Sobic001G118100 Sobic001G118100 Sobic004G241500--Sobic001G118100 Sobic004G001300 Sobic004G001300 Sobic004G241500--Sobic004G001300 Sobic001G489800 Sobic001G489800 Sobic010G236900--Sobic001G489800 Sobic010G236900--Sobic001G010800 Sobic002G353300 Sobic002G353300 Sobic010G236900--Sobic002G353300 Sobic003G254600 Sobic003G254600 Sobic010G236900--Sobic003G254600 Sobic001G424300 Sobic001G424300 Sobic010G236900--Sobic001G424300 Sobic010G202300 Sobic010G202300 Sobic010G236900--Sobic010G202300 Sobic010G236900--Sobic009G085100 Sobic001G281500 Sobic001G281500 Sobic010G236900--Sobic001G281500 Sobic001G065500 Sobic001G065500 Sobic010G236900--Sobic001G065500 Sobic004G218500--Sobic003G114100 Sobic008G101500 Sobic008G101500 Sobic004G218500--Sobic008G101500 Sobic003G170200 Sobic003G170200 Sobic004G218500--Sobic003G170200 Sobic010G091200 Sobic010G091200 Sobic004G218500--Sobic010G091200 Sobic004G218500--Sobic009G085100 Sobic008G118000 Sobic008G118000 Sobic004G218500--Sobic008G118000 Sobic004G218500--Sobic006G214400 Sobic007G179750 Sobic007G179750 Sobic004G218500--Sobic007G179750 Sobic004G175600 Sobic004G175600 Sobic004G218500--Sobic004G175600 Sobic001G010800--Sobic001G489800 Sobic001G375000 Sobic001G375000 Sobic001G010800--Sobic001G375000 Sobic003G310100 Sobic003G310100 Sobic001G010800--Sobic003G310100 Sobic001G010800--Sobic001G037500 Sobic003G128400 Sobic003G128400 Sobic001G010800--Sobic003G128400 Sobic002G056800 Sobic002G056800 Sobic001G010800--Sobic002G056800 Sobic008G130900 Sobic008G130900 Sobic001G010800--Sobic008G130900 Sobic003G327200 Sobic003G327200 Sobic001G010800--Sobic003G327200 Sobic004G003900 Sobic004G003900 Sobic001G010800--Sobic004G003900 Sobic002G042500 Sobic002G042500 Sobic001G037500--Sobic002G042500 Sobic001G054100 Sobic001G054100 Sobic001G037500--Sobic001G054100 Sobic001G037500--Sobic006G273400 Sobic003G150800 Sobic003G150800 Sobic001G037500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic001G037500--Sobic005G111550 Sobic004G206200 Sobic004G206200 Sobic001G037500--Sobic004G206200 Sobic002G081500 Sobic002G081500 Sobic001G037500--Sobic002G081500 Sobic003G372900 Sobic003G372900 Sobic001G037500--Sobic003G372900 Sobic002G296100 Sobic002G296100 Sobic001G037500--Sobic002G296100 Sobic004G208600 Sobic004G208600 Sobic001G384800--Sobic004G208600 Sobic007G013000 Sobic007G013000 Sobic001G384800--Sobic007G013000 Sobic001G495300 Sobic001G495300 Sobic001G384800--Sobic001G495300 Sobic001G384800--Sobic002G081500 Sobic001G202000 Sobic001G202000 Sobic001G384800--Sobic001G202000 Sobic005G084000 Sobic005G084000 Sobic001G384800--Sobic005G084000 Sobic001G099000 Sobic001G099000 Sobic001G384800--Sobic001G099000 Sobic002G109000 Sobic002G109000 Sobic001G384800--Sobic002G109000 Sobic001G384800--Sobic001G489800 Sobic009G127400--Sobic003G040000 Sobic009G127400--Sobic007G069400 Sobic009G127400--Sobic001G037500 Sobic007G076700 Sobic007G076700 Sobic009G127400--Sobic007G076700 Sobic003G149300 Sobic003G149300 Sobic009G127400--Sobic003G149300 Sobic009G127400--Sobic002G114700 Sobic005G197300 Sobic005G197300 Sobic009G127400--Sobic005G197300 Sobic009G127400--Sobic003G327200 Sobic001G261573 Sobic001G261573 Sobic009G127400--Sobic001G261573
Octagon: transcription factors


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