Gene annotation
Transcriptome id Sobic.002G242300.1
Synonym Sb02g027930, CCoAOMT1, SbCCoAOMT-like genes;caffeoyl-coenzyme A O-methyltransferases-like protein, SbCCoAOMT-2
Functional annotation (54.2% identity with SbCCoAOMT/70.2% similarity) (PubMedID : 27457122)
Functions are not investigated (PubMedID : 29721721)
caffeoyl-CoA O-methyltransferase, putative, expressed
UniProt C5X3S7
Pfam PF13578
Panther DB PTHR10509:SF26 PTHR10509
NCBI CDD KOG1663; O-methyltransferase
KEGG Orthology K00588; caffeoyl-CoA O-methyltransferase
Gene Ontology GO:0008171; O-methyltransferase activity


Orthologs (automatic annotation)
TAIR AT4G34050 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os09g30360.1 : caffeoyl-CoA O-methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a014180
Brachypodium KQJ90701
Barley HORVU7Hr1G026680.7 , HORVU7Hr1G026680.6 , HORVU7Hr1G026680.5 , HORVU7Hr1G026680.4 , HORVU7Hr1G026680.3 , HORVU7Hr1G026680.2 , HORVU7Hr1G026680.1 , HORVU5Hr1G072070.3 , HORVU5Hr1G072070.2 , HORVU5Hr1G072070.1 , HORVU5Hr1G072070.5 , HORVU5Hr1G072070.4
Wheat TraesCS7B02G027200 , TraesCS5D02G265900 , TraesCS7D02G126000 , TraesCS5A02G257600 , TraesCS7A02G127600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G397100 expressed protein -
2 Sobic.009G021600 Jacalin-like lectin domain containing protein, putative, expressed -
3 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
4 Sobic.006G261900 expressed protein -
5 Sobic.009G152600 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
6 Sobic.002G123500 dehydrodolichyl diphosphate synthase, putative, expressed K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
7 Sobic.006G245500 down-regulated TF in developmental senescence(PubMedID : 27586543)@AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
8 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
9 Sobic.004G262200 DNA binding protein, putative, expressed -
10 Sobic.004G301300 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.003G128700 flavin monooxygenase, putative, expressed -
12 Sobic.001G031700 nucleobase-ascorbate transporter, putative, expressed -
13 Sobic.001G231900 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
14 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
15 Sobic.006G138100 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
16 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
17 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
18 Sobic.003G289601 - -
19 Sobic.005G080900 expressed protein -
20 Sobic.002G329800 expressed protein -


Gene co-expression network
sample Sobic002G242300 Sobic002G242300 Sobic001G397100 Sobic001G397100 Sobic002G242300--Sobic001G397100 Sobic009G021600 Sobic009G021600 Sobic002G242300--Sobic009G021600 Sobic003G300900 Sobic003G300900 Sobic002G242300--Sobic003G300900 Sobic006G261900 Sobic006G261900 Sobic002G242300--Sobic006G261900 Sobic009G152600 Sobic009G152600 Sobic002G242300--Sobic009G152600 Sobic002G123500 Sobic002G123500 Sobic002G242300--Sobic002G123500 Sobic006G245500 Sobic006G245500 Sobic002G242300--Sobic006G245500 Sobic003G109600 Sobic003G109600 Sobic002G242300--Sobic003G109600 Sobic004G262200 Sobic004G262200 Sobic002G242300--Sobic004G262200 Sobic001G397100--Sobic006G245500 Sobic001G397100--Sobic002G242300 Sobic001G397100--Sobic009G021600 Sobic003G128700 Sobic003G128700 Sobic001G397100--Sobic003G128700 Sobic004G301300 Sobic004G301300 Sobic001G397100--Sobic004G301300 Sobic003G093700 Sobic003G093700 Sobic001G397100--Sobic003G093700 Sobic001G397100--Sobic003G300900 Sobic007G166000 Sobic007G166000 Sobic001G397100--Sobic007G166000 Sobic008G170500 Sobic008G170500 Sobic001G397100--Sobic008G170500 Sobic010G184800 Sobic010G184800 Sobic009G021600--Sobic010G184800 Sobic009G021600--Sobic009G152600 Sobic008G186100 Sobic008G186100 Sobic009G021600--Sobic008G186100 Sobic001G031700 Sobic001G031700 Sobic009G021600--Sobic001G031700 Sobic001G304100 Sobic001G304100 Sobic009G021600--Sobic001G304100 Sobic006G234800 Sobic006G234800 Sobic009G021600--Sobic006G234800 Sobic010G029700 Sobic010G029700 Sobic009G021600--Sobic010G029700 Sobic002G250000 Sobic002G250000 Sobic009G021600--Sobic002G250000 Sobic001G302600 Sobic001G302600 Sobic009G021600--Sobic001G302600 Sobic003G300900--Sobic008G170500 Sobic010G190300 Sobic010G190300 Sobic003G300900--Sobic010G190300 Sobic008G135500 Sobic008G135500 Sobic003G300900--Sobic008G135500 Sobic003G300900--Sobic003G128700 Sobic001G410200 Sobic001G410200 Sobic003G300900--Sobic001G410200 Sobic006G200000 Sobic006G200000 Sobic003G300900--Sobic006G200000 Sobic001G397000 Sobic001G397000 Sobic003G300900--Sobic001G397000 Sobic003G300900--Sobic006G245500 Sobic010G090100 Sobic010G090100 Sobic003G300900--Sobic010G090100 Sobic006G262300 Sobic006G262300 Sobic006G261900--Sobic006G262300 Sobic003G436700 Sobic003G436700 Sobic006G261900--Sobic003G436700 Sobic002G379500 Sobic002G379500 Sobic006G261900--Sobic002G379500 Sobic006G261900--Sobic003G109600 Sobic010G251600 Sobic010G251600 Sobic006G261900--Sobic010G251600 Sobic006G213000 Sobic006G213000 Sobic006G261900--Sobic006G213000 Sobic002G081600 Sobic002G081600 Sobic006G261900--Sobic002G081600 Sobic009G173500 Sobic009G173500 Sobic006G261900--Sobic009G173500 Sobic001G016500 Sobic001G016500 Sobic006G261900--Sobic001G016500 Sobic003G353300 Sobic003G353300 Sobic009G152600--Sobic003G353300 Sobic009G152600--Sobic009G021600 Sobic009G152600--Sobic008G186100 Sobic003G393900 Sobic003G393900 Sobic009G152600--Sobic003G393900 Sobic003G086600 Sobic003G086600 Sobic009G152600--Sobic003G086600 Sobic008G118700 Sobic008G118700 Sobic009G152600--Sobic008G118700 Sobic009G152600--Sobic001G031700 Sobic003G377100 Sobic003G377100 Sobic009G152600--Sobic003G377100 Sobic001G405500 Sobic001G405500 Sobic009G152600--Sobic001G405500 Sobic001G430100 Sobic001G430100 Sobic002G123500--Sobic001G430100 Sobic003G405300 Sobic003G405300 Sobic002G123500--Sobic003G405300 Sobic003G311800 Sobic003G311800 Sobic002G123500--Sobic003G311800 Sobic003G399700 Sobic003G399700 Sobic002G123500--Sobic003G399700 Sobic003G070500 Sobic003G070500 Sobic002G123500--Sobic003G070500 Sobic006G157900 Sobic006G157900 Sobic002G123500--Sobic006G157900 Sobic006G274933 Sobic006G274933 Sobic002G123500--Sobic006G274933 Sobic002G183700 Sobic002G183700 Sobic002G123500--Sobic002G183700 Sobic006G235200 Sobic006G235200 Sobic002G123500--Sobic006G235200 Sobic006G245500--Sobic008G170500 Sobic006G245500--Sobic003G128700 Sobic006G245500--Sobic003G300900 Sobic008G034300 Sobic008G034300 Sobic006G245500--Sobic008G034300 Sobic006G245500--Sobic010G090100 Sobic001G205800 Sobic001G205800 Sobic006G245500--Sobic001G205800 Sobic006G245500--Sobic001G397100 Sobic006G245500--Sobic008G135500 Sobic001G197800 Sobic001G197800 Sobic006G245500--Sobic001G197800 Sobic003G109600--Sobic002G379500 Sobic009G223300 Sobic009G223300 Sobic003G109600--Sobic009G223300 Sobic001G403500 Sobic001G403500 Sobic003G109600--Sobic001G403500 Sobic001G039400 Sobic001G039400 Sobic003G109600--Sobic001G039400 Sobic003G249700 Sobic003G249700 Sobic003G109600--Sobic003G249700 Sobic002G056200 Sobic002G056200 Sobic003G109600--Sobic002G056200 Sobic002G047600 Sobic002G047600 Sobic003G109600--Sobic002G047600 Sobic007G019400 Sobic007G019400 Sobic003G109600--Sobic007G019400 Sobic003G109600--Sobic003G436700 Sobic003G371750 Sobic003G371750 Sobic004G262200--Sobic003G371750 Sobic006G059700 Sobic006G059700 Sobic004G262200--Sobic006G059700 Sobic001G328800 Sobic001G328800 Sobic004G262200--Sobic001G328800 Sobic003G280400 Sobic003G280400 Sobic004G262200--Sobic003G280400 Sobic006G197100 Sobic006G197100 Sobic004G262200--Sobic006G197100 Sobic004G042000 Sobic004G042000 Sobic004G262200--Sobic004G042000 Sobic006G260200 Sobic006G260200 Sobic004G262200--Sobic006G260200 Sobic009G221500 Sobic009G221500 Sobic004G262200--Sobic009G221500 Sobic003G404600 Sobic003G404600 Sobic004G262200--Sobic003G404600
Octagon: transcription factors


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