Gene annotation
Transcriptome id Sobic.001G397100.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6QNP9
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g19275.1 : expressed protein
MaizeGDB (Corn) Zm00025a052591
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G245500 down-regulated TF in developmental senescence(PubMedID : 27586543)@AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
2 Sobic.002G242300 (54.2% identity with SbCCoAOMT/70.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
3 Sobic.009G021600 Jacalin-like lectin domain containing protein, putative, expressed -
4 Sobic.003G128700 flavin monooxygenase, putative, expressed -
5 Sobic.004G301300 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.003G093700 expressed protein -
7 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
8 Sobic.007G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS8-14 - C2H2 zinc finger protein, expressed -
9 Sobic.008G170500 AGC_PVPK_like_kin82y.20 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
10 Sobic.002G213600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
11 Sobic.010G063000 - -
12 Sobic.007G216550 - -
13 Sobic.005G013600 WRKY46, expressed -
14 Sobic.002G329800 expressed protein -
15 Sobic.010G271300 carrier, putative, expressed -
16 Sobic.004G308200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
17 Sobic.001G031700 nucleobase-ascorbate transporter, putative, expressed -
18 Sobic.001G231900 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
19 Sobic.004G117600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY39, expressed -
20 Sobic.003G417200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@esterase, putative, expressed -


Gene co-expression network
sample Sobic001G397100 Sobic001G397100 Sobic006G245500 Sobic006G245500 Sobic001G397100--Sobic006G245500 Sobic002G242300 Sobic002G242300 Sobic001G397100--Sobic002G242300 Sobic009G021600 Sobic009G021600 Sobic001G397100--Sobic009G021600 Sobic003G128700 Sobic003G128700 Sobic001G397100--Sobic003G128700 Sobic004G301300 Sobic004G301300 Sobic001G397100--Sobic004G301300 Sobic003G093700 Sobic003G093700 Sobic001G397100--Sobic003G093700 Sobic003G300900 Sobic003G300900 Sobic001G397100--Sobic003G300900 Sobic007G166000 Sobic007G166000 Sobic001G397100--Sobic007G166000 Sobic008G170500 Sobic008G170500 Sobic001G397100--Sobic008G170500 Sobic006G245500--Sobic008G170500 Sobic006G245500--Sobic003G128700 Sobic006G245500--Sobic003G300900 Sobic008G034300 Sobic008G034300 Sobic006G245500--Sobic008G034300 Sobic010G090100 Sobic010G090100 Sobic006G245500--Sobic010G090100 Sobic001G205800 Sobic001G205800 Sobic006G245500--Sobic001G205800 Sobic006G245500--Sobic001G397100 Sobic008G135500 Sobic008G135500 Sobic006G245500--Sobic008G135500 Sobic001G197800 Sobic001G197800 Sobic006G245500--Sobic001G197800 Sobic002G242300--Sobic001G397100 Sobic002G242300--Sobic009G021600 Sobic002G242300--Sobic003G300900 Sobic006G261900 Sobic006G261900 Sobic002G242300--Sobic006G261900 Sobic009G152600 Sobic009G152600 Sobic002G242300--Sobic009G152600 Sobic002G123500 Sobic002G123500 Sobic002G242300--Sobic002G123500 Sobic002G242300--Sobic006G245500 Sobic003G109600 Sobic003G109600 Sobic002G242300--Sobic003G109600 Sobic004G262200 Sobic004G262200 Sobic002G242300--Sobic004G262200 Sobic010G184800 Sobic010G184800 Sobic009G021600--Sobic010G184800 Sobic009G021600--Sobic009G152600 Sobic008G186100 Sobic008G186100 Sobic009G021600--Sobic008G186100 Sobic001G031700 Sobic001G031700 Sobic009G021600--Sobic001G031700 Sobic001G304100 Sobic001G304100 Sobic009G021600--Sobic001G304100 Sobic006G234800 Sobic006G234800 Sobic009G021600--Sobic006G234800 Sobic010G029700 Sobic010G029700 Sobic009G021600--Sobic010G029700 Sobic002G250000 Sobic002G250000 Sobic009G021600--Sobic002G250000 Sobic001G302600 Sobic001G302600 Sobic009G021600--Sobic001G302600 Sobic003G128700--Sobic003G300900 Sobic003G128700--Sobic006G245500 Sobic003G128700--Sobic008G170500 Sobic003G386800 Sobic003G386800 Sobic003G128700--Sobic003G386800 Sobic003G128700--Sobic001G397100 Sobic003G128700--Sobic008G135500 Sobic003G128700--Sobic010G090100 Sobic003G128700--Sobic002G242300 Sobic003G128700--Sobic008G034300 Sobic004G203700 Sobic004G203700 Sobic004G301300--Sobic004G203700 Sobic003G027400 Sobic003G027400 Sobic004G301300--Sobic003G027400 Sobic001G295200 Sobic001G295200 Sobic004G301300--Sobic001G295200 Sobic005G107900 Sobic005G107900 Sobic004G301300--Sobic005G107900 Sobic007G008100 Sobic007G008100 Sobic004G301300--Sobic007G008100 Sobic009G154200 Sobic009G154200 Sobic004G301300--Sobic009G154200 Sobic001G169500 Sobic001G169500 Sobic004G301300--Sobic001G169500 Sobic009G159400 Sobic009G159400 Sobic004G301300--Sobic009G159400 Sobic002G329800 Sobic002G329800 Sobic004G301300--Sobic002G329800 Sobic010G106500 Sobic010G106500 Sobic003G093700--Sobic010G106500 Sobic010G271300 Sobic010G271300 Sobic003G093700--Sobic010G271300 Sobic002G213600 Sobic002G213600 Sobic003G093700--Sobic002G213600 Sobic001G508532 Sobic001G508532 Sobic003G093700--Sobic001G508532 Sobic004G295100 Sobic004G295100 Sobic003G093700--Sobic004G295100 Sobic004G348800 Sobic004G348800 Sobic003G093700--Sobic004G348800 Sobic001G304201 Sobic001G304201 Sobic003G093700--Sobic001G304201 Sobic002G326500 Sobic002G326500 Sobic003G093700--Sobic002G326500 Sobic003G311800 Sobic003G311800 Sobic003G093700--Sobic003G311800 Sobic003G300900--Sobic008G170500 Sobic010G190300 Sobic010G190300 Sobic003G300900--Sobic010G190300 Sobic003G300900--Sobic008G135500 Sobic003G300900--Sobic003G128700 Sobic001G410200 Sobic001G410200 Sobic003G300900--Sobic001G410200 Sobic006G200000 Sobic006G200000 Sobic003G300900--Sobic006G200000 Sobic001G397000 Sobic001G397000 Sobic003G300900--Sobic001G397000 Sobic003G300900--Sobic006G245500 Sobic003G300900--Sobic010G090100 Sobic001G449600 Sobic001G449600 Sobic007G166000--Sobic001G449600 Sobic009G164600 Sobic009G164600 Sobic007G166000--Sobic009G164600 Sobic005G005600 Sobic005G005600 Sobic007G166000--Sobic005G005600 Sobic009G139700 Sobic009G139700 Sobic007G166000--Sobic009G139700 Sobic010G259600 Sobic010G259600 Sobic007G166000--Sobic010G259600 Sobic006G143400 Sobic006G143400 Sobic007G166000--Sobic006G143400 Sobic009G217700 Sobic009G217700 Sobic007G166000--Sobic009G217700 Sobic009G231000 Sobic009G231000 Sobic007G166000--Sobic009G231000 Sobic007G005700 Sobic007G005700 Sobic007G166000--Sobic007G005700 Sobic008G170500--Sobic003G300900 Sobic008G170500--Sobic006G245500 Sobic008G170500--Sobic008G135500 Sobic008G170500--Sobic001G205800 Sobic008G170500--Sobic010G090100 Sobic008G170500--Sobic001G197800 Sobic008G170500--Sobic003G128700 Sobic001G385900 Sobic001G385900 Sobic008G170500--Sobic001G385900 Sobic003G019400 Sobic003G019400 Sobic008G170500--Sobic003G019400
Octagon: transcription factors


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