Gene annotation
Transcriptome id Sobic.006G245500.1
Synonym CHO1, AIL5, Sb06g031120, EMK
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed
UniProt A0A1B6PNN9
Pfam PF00847
Panther DB PTHR32467 PTHR32467:SF25
NCBI CDD -
KEGG Orthology K09285; OVM, AP2-like factor, ANT lineage
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0007275multicellular organism development


Orthologs (automatic annotation)
TAIR AT5G57390 : AINTEGUMENTA-like 5
RAP-DB (Rice) LOC_Os04g55970.2 : AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed
MaizeGDB (Corn) Zm00025a009489 , Zm00025a047064 , Zm00025a005840
Brachypodium -
Barley -
Wheat TraesCS2B02G534000 , TraesCS2D02G506500 , TraesCS6A02G125700 , TraesCS2A02G505600 , TraesCS6B02G153800 , TraesCS5D02G229400 , TraesCS5B02G220400 , TraesCS5B02G220400
Populus PNT02410


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cDNA sequences
Sobic.006G245500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G170500 AGC_PVPK_like_kin82y.20 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
2 Sobic.003G128700 flavin monooxygenase, putative, expressed -
3 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
4 Sobic.008G034300 expressed protein -
5 Sobic.010G090100 phosphoglycerate mutase, putative, expressed K01834: PGAM, 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
6 Sobic.001G205800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lanC-like protein 2, putative, expressed -
7 Sobic.001G397100 expressed protein -
8 Sobic.008G135500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G197800 - -
10 Sobic.003G386800 auxin-responsive protein, putative, expressed -
11 Sobic.002G242300 (54.2% identity with SbCCoAOMT/70.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
12 Sobic.010G190300 lipid phosphatase protein, putative, expressed -
13 Sobic.010G091300 C2 domain containing protein, putative, expressed -
14 Sobic.004G133500 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
15 Sobic.003G019400 expressed protein -
16 Sobic.010G044300 expressed protein -
17 Sobic.001G386600 homeobox domain containing protein, expressed -
18 Sobic.009G021600 Jacalin-like lectin domain containing protein, putative, expressed -
19 Sobic.003G353300 expressed protein -
20 Sobic.001G296700 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A


Gene co-expression network
sample Sobic006G245500 Sobic006G245500 Sobic008G170500 Sobic008G170500 Sobic006G245500--Sobic008G170500 Sobic003G128700 Sobic003G128700 Sobic006G245500--Sobic003G128700 Sobic003G300900 Sobic003G300900 Sobic006G245500--Sobic003G300900 Sobic008G034300 Sobic008G034300 Sobic006G245500--Sobic008G034300 Sobic010G090100 Sobic010G090100 Sobic006G245500--Sobic010G090100 Sobic001G205800 Sobic001G205800 Sobic006G245500--Sobic001G205800 Sobic001G397100 Sobic001G397100 Sobic006G245500--Sobic001G397100 Sobic008G135500 Sobic008G135500 Sobic006G245500--Sobic008G135500 Sobic001G197800 Sobic001G197800 Sobic006G245500--Sobic001G197800 Sobic008G170500--Sobic003G300900 Sobic008G170500--Sobic006G245500 Sobic008G170500--Sobic008G135500 Sobic008G170500--Sobic001G205800 Sobic008G170500--Sobic010G090100 Sobic008G170500--Sobic001G197800 Sobic008G170500--Sobic003G128700 Sobic001G385900 Sobic001G385900 Sobic008G170500--Sobic001G385900 Sobic003G019400 Sobic003G019400 Sobic008G170500--Sobic003G019400 Sobic003G128700--Sobic003G300900 Sobic003G128700--Sobic006G245500 Sobic003G128700--Sobic008G170500 Sobic003G386800 Sobic003G386800 Sobic003G128700--Sobic003G386800 Sobic003G128700--Sobic001G397100 Sobic003G128700--Sobic008G135500 Sobic003G128700--Sobic010G090100 Sobic002G242300 Sobic002G242300 Sobic003G128700--Sobic002G242300 Sobic003G128700--Sobic008G034300 Sobic003G300900--Sobic008G170500 Sobic010G190300 Sobic010G190300 Sobic003G300900--Sobic010G190300 Sobic003G300900--Sobic008G135500 Sobic003G300900--Sobic003G128700 Sobic001G410200 Sobic001G410200 Sobic003G300900--Sobic001G410200 Sobic006G200000 Sobic006G200000 Sobic003G300900--Sobic006G200000 Sobic001G397000 Sobic001G397000 Sobic003G300900--Sobic001G397000 Sobic003G300900--Sobic006G245500 Sobic003G300900--Sobic010G090100 Sobic008G034300--Sobic001G205800 Sobic008G034300--Sobic006G245500 Sobic003G353300 Sobic003G353300 Sobic008G034300--Sobic003G353300 Sobic004G133500 Sobic004G133500 Sobic008G034300--Sobic004G133500 Sobic009G205100 Sobic009G205100 Sobic008G034300--Sobic009G205100 Sobic009G152600 Sobic009G152600 Sobic008G034300--Sobic009G152600 Sobic008G034300--Sobic003G128700 Sobic010G221800 Sobic010G221800 Sobic008G034300--Sobic010G221800 Sobic008G034300--Sobic002G242300 Sobic010G090100--Sobic003G019400 Sobic010G090100--Sobic001G197800 Sobic010G090100--Sobic008G170500 Sobic010G090100--Sobic003G300900 Sobic010G090100--Sobic006G245500 Sobic010G090100--Sobic008G135500 Sobic004G029450 Sobic004G029450 Sobic010G090100--Sobic004G029450 Sobic001G261400 Sobic001G261400 Sobic010G090100--Sobic001G261400 Sobic002G230900 Sobic002G230900 Sobic010G090100--Sobic002G230900 Sobic001G205800--Sobic008G170500 Sobic001G205800--Sobic001G385900 Sobic001G205800--Sobic008G034300 Sobic001G205800--Sobic006G245500 Sobic001G205800--Sobic010G221800 Sobic010G164400 Sobic010G164400 Sobic001G205800--Sobic010G164400 Sobic001G205800--Sobic003G128700 Sobic001G205800--Sobic003G386800 Sobic001G205800--Sobic003G300900 Sobic001G397100--Sobic006G245500 Sobic001G397100--Sobic002G242300 Sobic009G021600 Sobic009G021600 Sobic001G397100--Sobic009G021600 Sobic001G397100--Sobic003G128700 Sobic004G301300 Sobic004G301300 Sobic001G397100--Sobic004G301300 Sobic003G093700 Sobic003G093700 Sobic001G397100--Sobic003G093700 Sobic001G397100--Sobic003G300900 Sobic007G166000 Sobic007G166000 Sobic001G397100--Sobic007G166000 Sobic001G397100--Sobic008G170500 Sobic008G135500--Sobic003G300900 Sobic008G135500--Sobic008G170500 Sobic008G135500--Sobic010G090100 Sobic008G135500--Sobic006G245500 Sobic008G135500--Sobic003G128700 Sobic003G196000 Sobic003G196000 Sobic008G135500--Sobic003G196000 Sobic007G218100 Sobic007G218100 Sobic008G135500--Sobic007G218100 Sobic008G135500--Sobic001G197800 Sobic007G134800 Sobic007G134800 Sobic008G135500--Sobic007G134800 Sobic008G075350 Sobic008G075350 Sobic001G197800--Sobic008G075350 Sobic001G386600 Sobic001G386600 Sobic001G197800--Sobic001G386600 Sobic001G197800--Sobic010G090100 Sobic001G197800--Sobic003G019400 Sobic001G197800--Sobic008G170500 Sobic004G347500 Sobic004G347500 Sobic001G197800--Sobic004G347500 Sobic001G296700 Sobic001G296700 Sobic001G197800--Sobic001G296700 Sobic006G013300 Sobic006G013300 Sobic001G197800--Sobic006G013300 Sobic002G232900 Sobic002G232900 Sobic001G197800--Sobic002G232900
Octagon: transcription factors


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