Gene annotation
Transcriptome id Sobic.001G205800.2,Sobic.001G205800.1
Synonym Sb01g018190, GCL2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
lanC-like protein 2, putative, expressed
UniProt A0A1Z5S6K0 , A0A1Z5S6M6
Pfam PF05147
Panther DB PTHR12736 PTHR12736:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G52920 : G protein coupled receptor
RAP-DB (Rice) LOC_Os10g35480.1,LOC_Os10g35480.2 : lanC-like protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a006458
Brachypodium KQJ97297 , PNT67642 , KQJ97298
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G205800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G170500 AGC_PVPK_like_kin82y.20 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
2 Sobic.001G385900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@stress responsive protein, putative, expressed -
3 Sobic.008G034300 expressed protein -
4 Sobic.006G245500 down-regulated TF in developmental senescence(PubMedID : 27586543)@AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
5 Sobic.010G221800 Phosphoglycerate kinase(PubMedID : 26186930)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
6 Sobic.010G164400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
7 Sobic.003G128700 flavin monooxygenase, putative, expressed -
8 Sobic.003G386800 auxin-responsive protein, putative, expressed -
9 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
10 Sobic.001G197800 - -
11 Sobic.008G135500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G242300 (54.2% identity with SbCCoAOMT/70.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
13 Sobic.010G091300 C2 domain containing protein, putative, expressed -
14 Sobic.001G454000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
15 Sobic.002G231000 GRAM domain containing protein, expressed -
16 Sobic.007G153600 similar to Protein HVA22(PubMedID : 29862293)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
17 Sobic.001G396900 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
18 Sobic.010G044300 expressed protein -
19 Sobic.001G397100 expressed protein -
20 Sobic.010G090100 phosphoglycerate mutase, putative, expressed K01834: PGAM, 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase


Gene co-expression network
sample Sobic001G205800 Sobic001G205800 Sobic008G170500 Sobic008G170500 Sobic001G205800--Sobic008G170500 Sobic001G385900 Sobic001G385900 Sobic001G205800--Sobic001G385900 Sobic008G034300 Sobic008G034300 Sobic001G205800--Sobic008G034300 Sobic006G245500 Sobic006G245500 Sobic001G205800--Sobic006G245500 Sobic010G221800 Sobic010G221800 Sobic001G205800--Sobic010G221800 Sobic010G164400 Sobic010G164400 Sobic001G205800--Sobic010G164400 Sobic003G128700 Sobic003G128700 Sobic001G205800--Sobic003G128700 Sobic003G386800 Sobic003G386800 Sobic001G205800--Sobic003G386800 Sobic003G300900 Sobic003G300900 Sobic001G205800--Sobic003G300900 Sobic008G170500--Sobic003G300900 Sobic008G170500--Sobic006G245500 Sobic008G135500 Sobic008G135500 Sobic008G170500--Sobic008G135500 Sobic008G170500--Sobic001G205800 Sobic010G090100 Sobic010G090100 Sobic008G170500--Sobic010G090100 Sobic001G197800 Sobic001G197800 Sobic008G170500--Sobic001G197800 Sobic008G170500--Sobic003G128700 Sobic008G170500--Sobic001G385900 Sobic003G019400 Sobic003G019400 Sobic008G170500--Sobic003G019400 Sobic001G385900--Sobic001G205800 Sobic001G385900--Sobic008G170500 Sobic001G385900--Sobic010G164400 Sobic002G374650 Sobic002G374650 Sobic001G385900--Sobic002G374650 Sobic001G385900--Sobic010G221800 Sobic004G108100 Sobic004G108100 Sobic001G385900--Sobic004G108100 Sobic001G385900--Sobic003G300900 Sobic002G389100 Sobic002G389100 Sobic001G385900--Sobic002G389100 Sobic002G416500 Sobic002G416500 Sobic001G385900--Sobic002G416500 Sobic008G034300--Sobic001G205800 Sobic008G034300--Sobic006G245500 Sobic003G353300 Sobic003G353300 Sobic008G034300--Sobic003G353300 Sobic004G133500 Sobic004G133500 Sobic008G034300--Sobic004G133500 Sobic009G205100 Sobic009G205100 Sobic008G034300--Sobic009G205100 Sobic009G152600 Sobic009G152600 Sobic008G034300--Sobic009G152600 Sobic008G034300--Sobic003G128700 Sobic008G034300--Sobic010G221800 Sobic002G242300 Sobic002G242300 Sobic008G034300--Sobic002G242300 Sobic006G245500--Sobic008G170500 Sobic006G245500--Sobic003G128700 Sobic006G245500--Sobic003G300900 Sobic006G245500--Sobic008G034300 Sobic006G245500--Sobic010G090100 Sobic006G245500--Sobic001G205800 Sobic001G397100 Sobic001G397100 Sobic006G245500--Sobic001G397100 Sobic006G245500--Sobic008G135500 Sobic006G245500--Sobic001G197800 Sobic010G221800--Sobic001G205800 Sobic010G221800--Sobic001G385900 Sobic010G221800--Sobic008G034300 Sobic010G221800--Sobic008G170500 Sobic010G221800--Sobic010G164400 Sobic009G111400 Sobic009G111400 Sobic010G221800--Sobic009G111400 Sobic010G221800--Sobic006G245500 Sobic010G221800--Sobic002G389100 Sobic002G231000 Sobic002G231000 Sobic010G221800--Sobic002G231000 Sobic010G164400--Sobic001G385900 Sobic010G164400--Sobic001G205800 Sobic010G164400--Sobic010G221800 Sobic010G164400--Sobic002G389100 Sobic010G164400--Sobic002G416500 Sobic003G307100 Sobic003G307100 Sobic010G164400--Sobic003G307100 Sobic009G006500 Sobic009G006500 Sobic010G164400--Sobic009G006500 Sobic001G508400 Sobic001G508400 Sobic010G164400--Sobic001G508400 Sobic004G232300 Sobic004G232300 Sobic010G164400--Sobic004G232300 Sobic003G128700--Sobic003G300900 Sobic003G128700--Sobic006G245500 Sobic003G128700--Sobic008G170500 Sobic003G128700--Sobic003G386800 Sobic003G128700--Sobic001G397100 Sobic003G128700--Sobic008G135500 Sobic003G128700--Sobic010G090100 Sobic003G128700--Sobic002G242300 Sobic003G128700--Sobic008G034300 Sobic003G386800--Sobic003G128700 Sobic003G386800--Sobic006G245500 Sobic003G386800--Sobic008G170500 Sobic001G386600 Sobic001G386600 Sobic003G386800--Sobic001G386600 Sobic003G386800--Sobic003G300900 Sobic003G386800--Sobic001G205800 Sobic003G098300 Sobic003G098300 Sobic003G386800--Sobic003G098300 Sobic008G075350 Sobic008G075350 Sobic003G386800--Sobic008G075350 Sobic003G386800--Sobic010G090100 Sobic003G300900--Sobic008G170500 Sobic010G190300 Sobic010G190300 Sobic003G300900--Sobic010G190300 Sobic003G300900--Sobic008G135500 Sobic003G300900--Sobic003G128700 Sobic001G410200 Sobic001G410200 Sobic003G300900--Sobic001G410200 Sobic006G200000 Sobic006G200000 Sobic003G300900--Sobic006G200000 Sobic001G397000 Sobic001G397000 Sobic003G300900--Sobic001G397000 Sobic003G300900--Sobic006G245500 Sobic003G300900--Sobic010G090100
Octagon: transcription factors


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