Gene annotation
Transcriptome id Sobic.001G385900.1
Synonym Sb01g036580
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
stress responsive protein, putative, expressed
UniProt C5X1Q1
Pfam PF14200
Panther DB PTHR31257 PTHR31257:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39050 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os03g21040.2 : stress responsive protein, putative, expressed
MaizeGDB (Corn) Zm00025a015465 , Zm00025a049190 , Zm00025a049191 , Zm00025a049189 , Zm00025a002286
Brachypodium KQK21868 , KQK02752 , KQK14587 , KQK14589 , KQK14588
Barley HORVU2Hr1G017450.13 , HORVU2Hr1G017450.11 , HORVU2Hr1G017450.10 , HORVU2Hr1G017450.1 , HORVU2Hr1G017450.4 , HORVU2Hr1G017450.9 , HORVU2Hr1G017450.8 , HORVU2Hr1G017450.3 , HORVU2Hr1G017450.2 , HORVU2Hr1G017440.14 , HORVU2Hr1G017440.15 , HORVU2Hr1G017440.12 , HORVU2Hr1G017450.6 , HORVU2Hr1G017440.10 , HORVU2Hr1G017440.11 , HORVU7Hr1G121560.8 , HORVU7Hr1G121560.9 , HORVU2Hr1G017450.12 , HORVU7Hr1G121560.1 , HORVU7Hr1G121560.2 , HORVU7Hr1G121560.3 , HORVU7Hr1G121560.4 , HORVU7Hr1G121560.5 , HORVU7Hr1G121560.6 , HORVU7Hr1G121560.7 , HORVU0Hr1G006240.2 , HORVU0Hr1G006240.3 , HORVU0Hr1G006240.1 , HORVU3Hr1G014120.6 , HORVU3Hr1G014120.5 , HORVU3Hr1G014120.4 , HORVU3Hr1G014120.3 , HORVU3Hr1G014120.2 , HORVU3Hr1G014120.1 , HORVU2Hr1G017420.4 , HORVU2Hr1G017420.2 , HORVU2Hr1G017420.3 , HORVU2Hr1G017420.1 , HORVU4Hr1G051320.1 , HORVU4Hr1G051320.3 , HORVU4Hr1G051320.2 , HORVU4Hr1G051320.4 , HORVU2Hr1G017440.8 , HORVU2Hr1G017440.9 , HORVU2Hr1G017440.4 , HORVU2Hr1G017440.5 , HORVU2Hr1G017440.6 , HORVU2Hr1G017440.7 , HORVU2Hr1G017440.1 , HORVU2Hr1G017440.2 , HORVU2Hr1G017440.3
Wheat TraesCS2B02G118800 , TraesCS4D02G175900 , TraesCS4D02G175900 , TraesCS4D02G175900 , TraesCS7B02G474700 , TraesCS3D02G078600 , TraesCS2A02G101700 , TraesCS2D02G101200 , TraesCS2A02G101700 , TraesCS3B02G093100 , TraesCS3B02G093100 , TraesCS2B02G118900 , TraesCS2B02G118900 , TraesCS3A02G078200 , TraesCS2B02G118700 , TraesCS4B02G173700 , TraesCS4B02G173700 , TraesCS4B02G173700 , TraesCS2A02G101600 , TraesCS2A02G101800 , TraesCS2D02G101000 , TraesCS4A02G130800 , TraesCS4A02G130800 , TraesCS4A02G130800 , TraesCS7D02G537900 , TraesCS3B02G093000 , TraesCS3D02G078700 , TraesCS2D02G101100 , TraesCS2B02G118800 , TraesCS2D02G101100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G385900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G205800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lanC-like protein 2, putative, expressed -
2 Sobic.008G170500 AGC_PVPK_like_kin82y.20 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
3 Sobic.010G164400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
4 Sobic.002G374650 -(PubMedID : 26976818) K11517: (S)-2-hydroxy-acid oxidase
5 Sobic.010G221800 Phosphoglycerate kinase(PubMedID : 26186930)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
6 Sobic.004G108100 Ca exchanger(PubMedID : 22196357)@calcium-binding EF hand family protein, putative, expressed -
7 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
8 Sobic.002G389100 cytochrome P450 72A1, putative, expressed -
9 Sobic.002G416500 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.003G296100 DUF623 domain containing protein, expressed -
11 Sobic.006G200000 RNA recognition motif, putative, expressed -
12 Sobic.008G034300 expressed protein -
13 Sobic.001G410200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed K00434: L-ascorbate peroxidase
14 Sobic.002G107400 aldehyde oxidase, putative, expressed -
15 Sobic.009G006500 integral membrane protein DUF6 containing protein, expressed -
16 Sobic.008G034700 phytosulfokines precursor, putative, expressed -
17 Sobic.010G155100 NAC domain containing protein, putative, expressed -
18 Sobic.001G452200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Caleosin-related family protein("PubMedID : 26759170,PubMedID : 24597475")@caleosin related protein, putative, expressed K17991: peroxygenase
19 Sobic.008G135500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.010G170300 Os9bglu31 - beta-glucosidase, dhurrinase, similar to G. max hydroxyisourate hydrolase, expressed K01188: beta-glucosidase


Gene co-expression network
sample Sobic001G385900 Sobic001G385900 Sobic001G205800 Sobic001G205800 Sobic001G385900--Sobic001G205800 Sobic008G170500 Sobic008G170500 Sobic001G385900--Sobic008G170500 Sobic010G164400 Sobic010G164400 Sobic001G385900--Sobic010G164400 Sobic002G374650 Sobic002G374650 Sobic001G385900--Sobic002G374650 Sobic010G221800 Sobic010G221800 Sobic001G385900--Sobic010G221800 Sobic004G108100 Sobic004G108100 Sobic001G385900--Sobic004G108100 Sobic003G300900 Sobic003G300900 Sobic001G385900--Sobic003G300900 Sobic002G389100 Sobic002G389100 Sobic001G385900--Sobic002G389100 Sobic002G416500 Sobic002G416500 Sobic001G385900--Sobic002G416500 Sobic001G205800--Sobic008G170500 Sobic001G205800--Sobic001G385900 Sobic008G034300 Sobic008G034300 Sobic001G205800--Sobic008G034300 Sobic006G245500 Sobic006G245500 Sobic001G205800--Sobic006G245500 Sobic001G205800--Sobic010G221800 Sobic001G205800--Sobic010G164400 Sobic003G128700 Sobic003G128700 Sobic001G205800--Sobic003G128700 Sobic003G386800 Sobic003G386800 Sobic001G205800--Sobic003G386800 Sobic001G205800--Sobic003G300900 Sobic008G170500--Sobic003G300900 Sobic008G170500--Sobic006G245500 Sobic008G135500 Sobic008G135500 Sobic008G170500--Sobic008G135500 Sobic008G170500--Sobic001G205800 Sobic010G090100 Sobic010G090100 Sobic008G170500--Sobic010G090100 Sobic001G197800 Sobic001G197800 Sobic008G170500--Sobic001G197800 Sobic008G170500--Sobic003G128700 Sobic008G170500--Sobic001G385900 Sobic003G019400 Sobic003G019400 Sobic008G170500--Sobic003G019400 Sobic010G164400--Sobic001G385900 Sobic010G164400--Sobic001G205800 Sobic010G164400--Sobic010G221800 Sobic010G164400--Sobic002G389100 Sobic010G164400--Sobic002G416500 Sobic003G307100 Sobic003G307100 Sobic010G164400--Sobic003G307100 Sobic009G006500 Sobic009G006500 Sobic010G164400--Sobic009G006500 Sobic001G508400 Sobic001G508400 Sobic010G164400--Sobic001G508400 Sobic004G232300 Sobic004G232300 Sobic010G164400--Sobic004G232300 Sobic008G034700 Sobic008G034700 Sobic002G374650--Sobic008G034700 Sobic004G112200 Sobic004G112200 Sobic002G374650--Sobic004G112200 Sobic001G026300 Sobic001G026300 Sobic002G374650--Sobic001G026300 Sobic005G041300 Sobic005G041300 Sobic002G374650--Sobic005G041300 Sobic006G183900 Sobic006G183900 Sobic002G374650--Sobic006G183900 Sobic003G324600 Sobic003G324600 Sobic002G374650--Sobic003G324600 Sobic006G205500 Sobic006G205500 Sobic002G374650--Sobic006G205500 Sobic010G155100 Sobic010G155100 Sobic002G374650--Sobic010G155100 Sobic010G170300 Sobic010G170300 Sobic002G374650--Sobic010G170300 Sobic010G221800--Sobic001G205800 Sobic010G221800--Sobic001G385900 Sobic010G221800--Sobic008G034300 Sobic010G221800--Sobic008G170500 Sobic010G221800--Sobic010G164400 Sobic009G111400 Sobic009G111400 Sobic010G221800--Sobic009G111400 Sobic010G221800--Sobic006G245500 Sobic010G221800--Sobic002G389100 Sobic002G231000 Sobic002G231000 Sobic010G221800--Sobic002G231000 Sobic003G194400 Sobic003G194400 Sobic004G108100--Sobic003G194400 Sobic005G183200 Sobic005G183200 Sobic004G108100--Sobic005G183200 Sobic006G114700 Sobic006G114700 Sobic004G108100--Sobic006G114700 Sobic004G108100--Sobic009G006500 Sobic010G101300 Sobic010G101300 Sobic004G108100--Sobic010G101300 Sobic003G011400 Sobic003G011400 Sobic004G108100--Sobic003G011400 Sobic004G108100--Sobic001G385900 Sobic001G200700 Sobic001G200700 Sobic004G108100--Sobic001G200700 Sobic003G292400 Sobic003G292400 Sobic004G108100--Sobic003G292400 Sobic003G300900--Sobic008G170500 Sobic010G190300 Sobic010G190300 Sobic003G300900--Sobic010G190300 Sobic003G300900--Sobic008G135500 Sobic003G300900--Sobic003G128700 Sobic001G410200 Sobic001G410200 Sobic003G300900--Sobic001G410200 Sobic006G200000 Sobic006G200000 Sobic003G300900--Sobic006G200000 Sobic001G397000 Sobic001G397000 Sobic003G300900--Sobic001G397000 Sobic003G300900--Sobic006G245500 Sobic003G300900--Sobic010G090100 Sobic002G389100--Sobic001G508400 Sobic002G389100--Sobic002G416500 Sobic004G261400 Sobic004G261400 Sobic002G389100--Sobic004G261400 Sobic009G073800 Sobic009G073800 Sobic002G389100--Sobic009G073800 Sobic006G012800 Sobic006G012800 Sobic002G389100--Sobic006G012800 Sobic002G307600 Sobic002G307600 Sobic002G389100--Sobic002G307600 Sobic010G067400 Sobic010G067400 Sobic002G389100--Sobic010G067400 Sobic004G126700 Sobic004G126700 Sobic002G389100--Sobic004G126700 Sobic009G158500 Sobic009G158500 Sobic002G389100--Sobic009G158500 Sobic002G416500--Sobic001G508400 Sobic006G181900 Sobic006G181900 Sobic002G416500--Sobic006G181900 Sobic002G416500--Sobic002G389100 Sobic003G015200 Sobic003G015200 Sobic002G416500--Sobic003G015200 Sobic002G416500--Sobic009G006500 Sobic007G058600 Sobic007G058600 Sobic002G416500--Sobic007G058600 Sobic002G416500--Sobic001G026300 Sobic001G452200 Sobic001G452200 Sobic002G416500--Sobic001G452200 Sobic002G416500--Sobic004G261400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.