Gene annotation
Transcriptome id Sobic.009G006500.1
Synonym Sb09g000790
Functional annotation integral membrane protein DUF6 containing protein, expressed
UniProt C5YY34
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT5G64700 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os12g33300.1 : integral membrane protein DUF6 containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK10253 , KQK10254
Barley HORVU3Hr1G079420.9 , HORVU3Hr1G079420.8 , HORVU3Hr1G079420.7 , HORVU3Hr1G079420.6 , HORVU3Hr1G079420.5 , HORVU3Hr1G079420.4 , HORVU3Hr1G079420.3 , HORVU3Hr1G079420.2 , HORVU3Hr1G079420.1 , HORVU3Hr1G079420.15 , HORVU3Hr1G079420.14 , HORVU3Hr1G079420.13 , HORVU3Hr1G079420.12 , HORVU3Hr1G079420.11 , HORVU3Hr1G079420.10 , HORVU1Hr1G002770.1
Wheat TraesCS3D02G328900 , TraesCS1B02G049500 , TraesCS1D02G019300 , TraesCS3A02G335900 , TraesCS3B02G366800 , TraesCS1A02G019800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G015500 - -
2 Sobic.007G058600 O-methyltransferase, putative, expressed K13066: E2.1.1.68, caffeic acid 3-O-methyltransferase
3 Sobic.003G015200 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
4 Sobic.004G308300 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
5 Sobic.006G181900 aluminum-activated malate transporter, putative, expressed -
6 Sobic.010G070750 - -
7 Sobic.006G142000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.002G107400 aldehyde oxidase, putative, expressed -
9 Sobic.001G323600 transporter family protein, putative, expressed -
10 Sobic.001G452200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Caleosin-related family protein("PubMedID : 26759170,PubMedID : 24597475")@caleosin related protein, putative, expressed K17991: peroxygenase
11 Sobic.003G011400 similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed -
12 Sobic.009G158600 - -
13 Sobic.007G164500 - -
14 Sobic.003G024600 CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
15 Sobic.001G373600 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
16 Sobic.005G088700 expressed protein -
17 Sobic.001G466450 - -
18 Sobic.001G466450 - -
19 Sobic.001G466450 - -
20 Sobic.001G466450 - -


Gene co-expression network
sample Sobic009G006500 Sobic009G006500 Sobic009G015500 Sobic009G015500 Sobic009G006500--Sobic009G015500 Sobic007G058600 Sobic007G058600 Sobic009G006500--Sobic007G058600 Sobic003G015200 Sobic003G015200 Sobic009G006500--Sobic003G015200 Sobic004G308300 Sobic004G308300 Sobic009G006500--Sobic004G308300 Sobic006G181900 Sobic006G181900 Sobic009G006500--Sobic006G181900 Sobic010G070750 Sobic010G070750 Sobic009G006500--Sobic010G070750 Sobic006G142000 Sobic006G142000 Sobic009G006500--Sobic006G142000 Sobic002G107400 Sobic002G107400 Sobic009G006500--Sobic002G107400 Sobic001G323600 Sobic001G323600 Sobic009G006500--Sobic001G323600 Sobic009G015500--Sobic007G058600 Sobic009G015500--Sobic001G323600 Sobic009G015500--Sobic010G070750 Sobic009G015500--Sobic004G308300 Sobic005G088700 Sobic005G088700 Sobic009G015500--Sobic005G088700 Sobic009G158600 Sobic009G158600 Sobic009G015500--Sobic009G158600 Sobic003G024600 Sobic003G024600 Sobic009G015500--Sobic003G024600 Sobic007G164500 Sobic007G164500 Sobic009G015500--Sobic007G164500 Sobic001G373600 Sobic001G373600 Sobic009G015500--Sobic001G373600 Sobic007G058600--Sobic009G015500 Sobic007G058600--Sobic003G015200 Sobic005G064900 Sobic005G064900 Sobic007G058600--Sobic005G064900 Sobic007G058600--Sobic001G323600 Sobic007G058600--Sobic006G142000 Sobic007G058600--Sobic005G088700 Sobic007G058600--Sobic003G024600 Sobic007G058600--Sobic001G373600 Sobic007G058600--Sobic007G164500 Sobic003G015200--Sobic007G058600 Sobic004G108800 Sobic004G108800 Sobic003G015200--Sobic004G108800 Sobic003G015200--Sobic005G064900 Sobic003G015200--Sobic009G015500 Sobic005G149600 Sobic005G149600 Sobic003G015200--Sobic005G149600 Sobic007G156800 Sobic007G156800 Sobic003G015200--Sobic007G156800 Sobic005G152500 Sobic005G152500 Sobic003G015200--Sobic005G152500 Sobic005G089200 Sobic005G089200 Sobic003G015200--Sobic005G089200 Sobic003G015200--Sobic009G006500 Sobic004G308300--Sobic007G164500 Sobic004G308300--Sobic001G323600 Sobic004G308300--Sobic003G024600 Sobic004G308300--Sobic010G070750 Sobic004G308300--Sobic001G373600 Sobic001G466450 Sobic001G466450 Sobic004G308300--Sobic001G466450 Sobic009G158500 Sobic009G158500 Sobic006G181900--Sobic009G158500 Sobic006G181900--Sobic007G058600 Sobic006G181900--Sobic009G015500 Sobic001G508400 Sobic001G508400 Sobic006G181900--Sobic001G508400 Sobic006G181900--Sobic010G070750 Sobic006G181900--Sobic009G006500 Sobic006G181900--Sobic003G024600 Sobic006G181900--Sobic003G015200 Sobic006G181900--Sobic001G323600 Sobic010G070750--Sobic007G164500 Sobic010G070750--Sobic001G323600 Sobic010G070750--Sobic003G024600 Sobic010G070750--Sobic001G373600 Sobic010G070750--Sobic001G466450 Sobic006G142000--Sobic007G164500 Sobic006G142000--Sobic001G373600 Sobic006G142000--Sobic001G323600 Sobic006G142000--Sobic003G024600 Sobic006G142000--Sobic007G058600 Sobic006G142000--Sobic001G466450 Sobic010G170300 Sobic010G170300 Sobic002G107400--Sobic010G170300 Sobic004G101400 Sobic004G101400 Sobic002G107400--Sobic004G101400 Sobic002G107400--Sobic009G006500 Sobic002G107400--Sobic003G015200 Sobic001G026300 Sobic001G026300 Sobic002G107400--Sobic001G026300 Sobic002G107400--Sobic007G156800 Sobic002G107400--Sobic009G015500 Sobic002G107400--Sobic005G149600 Sobic001G452200 Sobic001G452200 Sobic002G107400--Sobic001G452200 Sobic001G323600--Sobic001G373600 Sobic001G323600--Sobic007G164500 Sobic001G323600--Sobic003G024600 Sobic001G323600--Sobic005G088700 Sobic001G323600--Sobic001G466450
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.