Gene annotation
| Transcriptome id | Sobic.004G108100.1 |
|---|---|
| Synonym | Sb04g008850 |
| Functional annotation | Ca exchanger (PubMedID : 22196357) calcium-binding EF hand family protein, putative, expressed |
| UniProt | A0A194YNZ3 |
| Pfam | PF01699 |
| Panther DB | PTHR10891 PTHR10891:SF633 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT1G53210 : sodium/calcium exchanger family protein / calcium-binding EF hand family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g14980.1 : calcium-binding EF hand family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a019977 , Zm00025a019976 |
| Brachypodium | KQJ94232 |
| Barley | HORVU7Hr1G037600.1 , HORVU7Hr1G037600.3 , HORVU7Hr1G037600.2 , HORVU7Hr1G037600.4 , HORVU7Hr1G037600.11 , HORVU7Hr1G037600.10 , HORVU7Hr1G037600.5 , HORVU7Hr1G037600.7 , HORVU7Hr1G037600.6 , HORVU7Hr1G037600.9 , HORVU7Hr1G037600.8 |
| Wheat | TraesCS7A02G183100 , TraesCS7B02G088100 , TraesCS7D02G184700 |
| Populus | - |
JBrowse
| Sobic.004G108100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G194400 | HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 2 | Sobic.005G183200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@14-3-3 protein, putative, expressed | K06630: 14-3-3 protein epsilon |
| 3 | Sobic.006G114700 | Up-reguralion under drought(PubMedID : 24916767)@phosphofructokinase 2("PubMedID : 26759170,PubMedID : 24597475")@phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 4 | Sobic.009G006500 | integral membrane protein DUF6 containing protein, expressed | - |
| 5 | Sobic.010G101300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed | K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit |
| 6 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
| 7 | Sobic.001G385900 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@stress responsive protein, putative, expressed | - |
| 8 | Sobic.001G200700 | expressed protein | - |
| 9 | Sobic.003G292400 | NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 10 | Sobic.001G452200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Caleosin-related family protein("PubMedID : 26759170,PubMedID : 24597475")@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 11 | Sobic.007G058600 | O-methyltransferase, putative, expressed | K13066: E2.1.1.68, caffeic acid 3-O-methyltransferase |
| 12 | Sobic.004G243300 | expressed protein | - |
| 13 | Sobic.009G015500 | - | - |
| 14 | Sobic.006G181900 | aluminum-activated malate transporter, putative, expressed | - |
| 15 | Sobic.002G141800 | expressed protein | - |
| 16 | Sobic.009G116700 | "dehydrin SbDHN1, maps into mapped into a stay green mQTL (QSTG meta1.9)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@rab16/17 homolog(PubMedID : 15579713)@dehydrin, putative, expressed | - |
| 17 | Sobic.003G015200 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 18 | Sobic.002G107400 | aldehyde oxidase, putative, expressed | - |
| 19 | Sobic.004G232300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed | - |
| 20 | Sobic.009G158500 | - | - |
Gene co-expression network
Octagon: transcription factors
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