Gene annotation
Transcriptome id Sobic.010G221800.2,Sobic.010G221800.1,Sobic.010G221800.3
Synonym PGK, Sb10g026710,
Functional annotation Phosphoglycerate kinase (PubMedID : 26186930)
SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
phosphoglycerate kinase protein, putative, expressed
UniProt A0A194YKQ5
Pfam PF00162
Panther DB PTHR11406 PTHR11406:SF9
NCBI CDD -
KEGG Orthology K00927; PGK, phosphoglycerate kinase
Gene Ontology GO:0006096; glycolytic process GO:0004618phosphoglycerate kinase activity


Orthologs (automatic annotation)
TAIR AT1G79550 : phosphoglycerate kinase
RAP-DB (Rice) LOC_Os06g45710.1 : phosphoglycerate kinase protein, putative, expressed
MaizeGDB (Corn) Zm00025a044102 , Zm00025a027193 , Zm00025a019076
Brachypodium KQJ93534 , KQJ93535
Barley HORVU4Hr1G055460.10 , HORVU4Hr1G055460.11 , HORVU4Hr1G055460.12 , HORVU6Hr1G031830.1 , HORVU6Hr1G031830.3 , HORVU6Hr1G031830.2 , HORVU6Hr1G031830.5 , HORVU6Hr1G031830.4 , HORVU7Hr1G108230.7 , HORVU6Hr1G031830.6 , HORVU7Hr1G108230.9 , HORVU7Hr1G108230.8 , HORVU7Hr1G108230.11 , HORVU7Hr1G108230.10 , HORVU7Hr1G108230.12 , HORVU4Hr1G055460.6 , HORVU4Hr1G055460.7 , HORVU4Hr1G055460.4 , HORVU4Hr1G055460.5 , HORVU4Hr1G055460.2 , HORVU4Hr1G055460.3 , HORVU4Hr1G055460.1 , HORVU7Hr1G108230.3 , HORVU4Hr1G055460.8 , HORVU7Hr1G108230.6
Wheat TraesCS7A02G473900 , TraesCS6A02G158300 , TraesCS6D02G148700 , TraesCS6D02G148700 , TraesCS7D02G460700 , TraesCS7D02G460700 , TraesCS6B02G187500 , TraesCS6B02G187500 , TraesCS7D02G460800 , TraesCS7B02G375300
Populus PNT17055 , PNT17054 , PNT17056 , PNT23500 , PNT23501 , PNT23502 , PNT23503


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cDNA sequences
Sobic.010G221800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G205800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lanC-like protein 2, putative, expressed -
2 Sobic.001G385900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@stress responsive protein, putative, expressed -
3 Sobic.008G034300 expressed protein -
4 Sobic.008G170500 AGC_PVPK_like_kin82y.20 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
5 Sobic.010G164400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
6 Sobic.009G111400 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
7 Sobic.006G245500 down-regulated TF in developmental senescence(PubMedID : 27586543)@AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
8 Sobic.002G389100 cytochrome P450 72A1, putative, expressed -
9 Sobic.002G231000 GRAM domain containing protein, expressed -
10 Sobic.002G318100 expressed protein -
11 Sobic.010G089500 annexin, putative, expressed -
12 Sobic.009G204601 - K00850: pfkA, 6-phosphofructokinase 1
13 Sobic.001G034900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
14 Sobic.004G266000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
15 Sobic.001G410200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed K00434: L-ascorbate peroxidase
16 Sobic.003G249900 metallo-beta-lactamase family protein, putative, expressed K17725: sulfur dioxygenase
17 Sobic.004G245600 expressed protein -
18 Sobic.010G190300 lipid phosphatase protein, putative, expressed -
19 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
20 Sobic.002G159900 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1


Gene co-expression network
sample Sobic010G221800 Sobic010G221800 Sobic001G205800 Sobic001G205800 Sobic010G221800--Sobic001G205800 Sobic001G385900 Sobic001G385900 Sobic010G221800--Sobic001G385900 Sobic008G034300 Sobic008G034300 Sobic010G221800--Sobic008G034300 Sobic008G170500 Sobic008G170500 Sobic010G221800--Sobic008G170500 Sobic010G164400 Sobic010G164400 Sobic010G221800--Sobic010G164400 Sobic009G111400 Sobic009G111400 Sobic010G221800--Sobic009G111400 Sobic006G245500 Sobic006G245500 Sobic010G221800--Sobic006G245500 Sobic002G389100 Sobic002G389100 Sobic010G221800--Sobic002G389100 Sobic002G231000 Sobic002G231000 Sobic010G221800--Sobic002G231000 Sobic001G205800--Sobic008G170500 Sobic001G205800--Sobic001G385900 Sobic001G205800--Sobic008G034300 Sobic001G205800--Sobic006G245500 Sobic001G205800--Sobic010G221800 Sobic001G205800--Sobic010G164400 Sobic003G128700 Sobic003G128700 Sobic001G205800--Sobic003G128700 Sobic003G386800 Sobic003G386800 Sobic001G205800--Sobic003G386800 Sobic003G300900 Sobic003G300900 Sobic001G205800--Sobic003G300900 Sobic001G385900--Sobic001G205800 Sobic001G385900--Sobic008G170500 Sobic001G385900--Sobic010G164400 Sobic002G374650 Sobic002G374650 Sobic001G385900--Sobic002G374650 Sobic001G385900--Sobic010G221800 Sobic004G108100 Sobic004G108100 Sobic001G385900--Sobic004G108100 Sobic001G385900--Sobic003G300900 Sobic001G385900--Sobic002G389100 Sobic002G416500 Sobic002G416500 Sobic001G385900--Sobic002G416500 Sobic008G034300--Sobic001G205800 Sobic008G034300--Sobic006G245500 Sobic003G353300 Sobic003G353300 Sobic008G034300--Sobic003G353300 Sobic004G133500 Sobic004G133500 Sobic008G034300--Sobic004G133500 Sobic009G205100 Sobic009G205100 Sobic008G034300--Sobic009G205100 Sobic009G152600 Sobic009G152600 Sobic008G034300--Sobic009G152600 Sobic008G034300--Sobic003G128700 Sobic008G034300--Sobic010G221800 Sobic002G242300 Sobic002G242300 Sobic008G034300--Sobic002G242300 Sobic008G170500--Sobic003G300900 Sobic008G170500--Sobic006G245500 Sobic008G135500 Sobic008G135500 Sobic008G170500--Sobic008G135500 Sobic008G170500--Sobic001G205800 Sobic010G090100 Sobic010G090100 Sobic008G170500--Sobic010G090100 Sobic001G197800 Sobic001G197800 Sobic008G170500--Sobic001G197800 Sobic008G170500--Sobic003G128700 Sobic008G170500--Sobic001G385900 Sobic003G019400 Sobic003G019400 Sobic008G170500--Sobic003G019400 Sobic010G164400--Sobic001G385900 Sobic010G164400--Sobic001G205800 Sobic010G164400--Sobic010G221800 Sobic010G164400--Sobic002G389100 Sobic010G164400--Sobic002G416500 Sobic003G307100 Sobic003G307100 Sobic010G164400--Sobic003G307100 Sobic009G006500 Sobic009G006500 Sobic010G164400--Sobic009G006500 Sobic001G508400 Sobic001G508400 Sobic010G164400--Sobic001G508400 Sobic004G232300 Sobic004G232300 Sobic010G164400--Sobic004G232300 Sobic010G101600 Sobic010G101600 Sobic009G111400--Sobic010G101600 Sobic002G090300 Sobic002G090300 Sobic009G111400--Sobic002G090300 Sobic003G096000 Sobic003G096000 Sobic009G111400--Sobic003G096000 Sobic010G190300 Sobic010G190300 Sobic009G111400--Sobic010G190300 Sobic010G089500 Sobic010G089500 Sobic009G111400--Sobic010G089500 Sobic006G224000 Sobic006G224000 Sobic009G111400--Sobic006G224000 Sobic002G186900 Sobic002G186900 Sobic009G111400--Sobic002G186900 Sobic004G056400 Sobic004G056400 Sobic009G111400--Sobic004G056400 Sobic004G055700 Sobic004G055700 Sobic009G111400--Sobic004G055700 Sobic006G245500--Sobic008G170500 Sobic006G245500--Sobic003G128700 Sobic006G245500--Sobic003G300900 Sobic006G245500--Sobic008G034300 Sobic006G245500--Sobic010G090100 Sobic006G245500--Sobic001G205800 Sobic001G397100 Sobic001G397100 Sobic006G245500--Sobic001G397100 Sobic006G245500--Sobic008G135500 Sobic006G245500--Sobic001G197800 Sobic002G389100--Sobic001G508400 Sobic002G389100--Sobic002G416500 Sobic004G261400 Sobic004G261400 Sobic002G389100--Sobic004G261400 Sobic009G073800 Sobic009G073800 Sobic002G389100--Sobic009G073800 Sobic006G012800 Sobic006G012800 Sobic002G389100--Sobic006G012800 Sobic002G307600 Sobic002G307600 Sobic002G389100--Sobic002G307600 Sobic010G067400 Sobic010G067400 Sobic002G389100--Sobic010G067400 Sobic004G126700 Sobic004G126700 Sobic002G389100--Sobic004G126700 Sobic009G158500 Sobic009G158500 Sobic002G389100--Sobic009G158500 Sobic002G231000--Sobic009G152600 Sobic002G231000--Sobic001G205800 Sobic003G249900 Sobic003G249900 Sobic002G231000--Sobic003G249900 Sobic002G231000--Sobic010G221800 Sobic003G210100 Sobic003G210100 Sobic002G231000--Sobic003G210100 Sobic004G315300 Sobic004G315300 Sobic002G231000--Sobic004G315300 Sobic002G231000--Sobic003G386800 Sobic004G106600 Sobic004G106600 Sobic002G231000--Sobic004G106600 Sobic002G074200 Sobic002G074200 Sobic002G231000--Sobic002G074200
Octagon: transcription factors


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