Gene annotation
Transcriptome id Sobic.002G231000.1
Synonym GEM, Sb02g027030
Functional annotation GRAM domain containing protein, expressed
UniProt C5X2Y9
Pfam PF02893
Panther DB PTHR31969 PTHR31969:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G22475 : GRAM domain family protein
RAP-DB (Rice) LOC_Os09g29120.1 : GRAM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047319
Brachypodium PNT64753 , KQJ90575
Barley HORVU5Hr1G069750.10 , HORVU5Hr1G069750.3 , HORVU5Hr1G069750.4 , HORVU5Hr1G069750.2 , HORVU5Hr1G069750.1 , HORVU5Hr1G069750.6 , HORVU5Hr1G069750.7 , HORVU5Hr1G069750.5 , HORVU5Hr1G069750.8 , HORVU5Hr1G069750.9
Wheat TraesCS5D02G253400 , TraesCS5A02G246900 , TraesCS5B02G244000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G152600 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
2 Sobic.001G205800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lanC-like protein 2, putative, expressed -
3 Sobic.003G249900 metallo-beta-lactamase family protein, putative, expressed K17725: sulfur dioxygenase
4 Sobic.010G221800 Phosphoglycerate kinase(PubMedID : 26186930)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
5 Sobic.003G210100 stress responsive A/B Barrel domain containing protein, expressed -
6 Sobic.004G315300 DNA-3-methyladenine glycosylase, putative, expressed K03652: DNA-3-methyladenine glycosylase
7 Sobic.003G386800 auxin-responsive protein, putative, expressed -
8 Sobic.004G106600 hydroquinone glucosyltransferase, putative, expressed -
9 Sobic.002G074200 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
10 Sobic.010G044300 expressed protein -
11 Sobic.008G170500 AGC_PVPK_like_kin82y.20 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
12 Sobic.005G080900 expressed protein -
13 Sobic.004G274900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
14 Sobic.002G379100 dehydrogenase, putative, expressed -
15 Sobic.006G200000 RNA recognition motif, putative, expressed -
16 Sobic.001G343500 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
17 Sobic.004G222900 - -
18 Sobic.001G357100 ZOS9-11 - C2H2 zinc finger protein, expressed -
19 Sobic.003G301000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@SGS domain containing protein, expressed K04507: CACYBP, calcyclin binding protein
20 Sobic.007G169500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@Ribosomal protein L1p/L10e family("PubMedID : 26759170,PubMedID : 24597475")@L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae


Gene co-expression network
sample Sobic002G231000 Sobic002G231000 Sobic009G152600 Sobic009G152600 Sobic002G231000--Sobic009G152600 Sobic001G205800 Sobic001G205800 Sobic002G231000--Sobic001G205800 Sobic003G249900 Sobic003G249900 Sobic002G231000--Sobic003G249900 Sobic010G221800 Sobic010G221800 Sobic002G231000--Sobic010G221800 Sobic003G210100 Sobic003G210100 Sobic002G231000--Sobic003G210100 Sobic004G315300 Sobic004G315300 Sobic002G231000--Sobic004G315300 Sobic003G386800 Sobic003G386800 Sobic002G231000--Sobic003G386800 Sobic004G106600 Sobic004G106600 Sobic002G231000--Sobic004G106600 Sobic002G074200 Sobic002G074200 Sobic002G231000--Sobic002G074200 Sobic003G353300 Sobic003G353300 Sobic009G152600--Sobic003G353300 Sobic009G021600 Sobic009G021600 Sobic009G152600--Sobic009G021600 Sobic008G186100 Sobic008G186100 Sobic009G152600--Sobic008G186100 Sobic003G393900 Sobic003G393900 Sobic009G152600--Sobic003G393900 Sobic003G086600 Sobic003G086600 Sobic009G152600--Sobic003G086600 Sobic008G118700 Sobic008G118700 Sobic009G152600--Sobic008G118700 Sobic001G031700 Sobic001G031700 Sobic009G152600--Sobic001G031700 Sobic003G377100 Sobic003G377100 Sobic009G152600--Sobic003G377100 Sobic001G405500 Sobic001G405500 Sobic009G152600--Sobic001G405500 Sobic008G170500 Sobic008G170500 Sobic001G205800--Sobic008G170500 Sobic001G385900 Sobic001G385900 Sobic001G205800--Sobic001G385900 Sobic008G034300 Sobic008G034300 Sobic001G205800--Sobic008G034300 Sobic006G245500 Sobic006G245500 Sobic001G205800--Sobic006G245500 Sobic001G205800--Sobic010G221800 Sobic010G164400 Sobic010G164400 Sobic001G205800--Sobic010G164400 Sobic003G128700 Sobic003G128700 Sobic001G205800--Sobic003G128700 Sobic001G205800--Sobic003G386800 Sobic003G300900 Sobic003G300900 Sobic001G205800--Sobic003G300900 Sobic005G080900 Sobic005G080900 Sobic003G249900--Sobic005G080900 Sobic004G274900 Sobic004G274900 Sobic003G249900--Sobic004G274900 Sobic006G260300 Sobic006G260300 Sobic003G249900--Sobic006G260300 Sobic010G257100 Sobic010G257100 Sobic003G249900--Sobic010G257100 Sobic008G025600 Sobic008G025600 Sobic003G249900--Sobic008G025600 Sobic003G072300 Sobic003G072300 Sobic003G249900--Sobic003G072300 Sobic002G092200 Sobic002G092200 Sobic003G249900--Sobic002G092200 Sobic001G368800 Sobic001G368800 Sobic003G249900--Sobic001G368800 Sobic006G261900 Sobic006G261900 Sobic003G249900--Sobic006G261900 Sobic010G221800--Sobic001G205800 Sobic010G221800--Sobic001G385900 Sobic010G221800--Sobic008G034300 Sobic010G221800--Sobic008G170500 Sobic010G221800--Sobic010G164400 Sobic009G111400 Sobic009G111400 Sobic010G221800--Sobic009G111400 Sobic010G221800--Sobic006G245500 Sobic002G389100 Sobic002G389100 Sobic010G221800--Sobic002G389100 Sobic010G221800--Sobic002G231000 Sobic010G070500 Sobic010G070500 Sobic003G210100--Sobic010G070500 Sobic008G033400 Sobic008G033400 Sobic003G210100--Sobic008G033400 Sobic009G242300 Sobic009G242300 Sobic003G210100--Sobic009G242300 Sobic009G242400 Sobic009G242400 Sobic003G210100--Sobic009G242400 Sobic009G101700 Sobic009G101700 Sobic003G210100--Sobic009G101700 Sobic002G179300 Sobic002G179300 Sobic003G210100--Sobic002G179300 Sobic002G393400 Sobic002G393400 Sobic003G210100--Sobic002G393400 Sobic003G210100--Sobic005G080900 Sobic007G140300 Sobic007G140300 Sobic003G210100--Sobic007G140300 Sobic007G058400 Sobic007G058400 Sobic004G315300--Sobic007G058400 Sobic004G315300--Sobic001G031700 Sobic003G289601 Sobic003G289601 Sobic004G315300--Sobic003G289601 Sobic002G123500 Sobic002G123500 Sobic004G315300--Sobic002G123500 Sobic004G315300--Sobic006G261900 Sobic004G315300--Sobic002G074200 Sobic007G029400 Sobic007G029400 Sobic004G315300--Sobic007G029400 Sobic004G315300--Sobic005G080900 Sobic004G315300--Sobic009G021600 Sobic003G386800--Sobic003G128700 Sobic003G386800--Sobic006G245500 Sobic003G386800--Sobic008G170500 Sobic001G386600 Sobic001G386600 Sobic003G386800--Sobic001G386600 Sobic003G386800--Sobic003G300900 Sobic003G386800--Sobic001G205800 Sobic003G098300 Sobic003G098300 Sobic003G386800--Sobic003G098300 Sobic008G075350 Sobic008G075350 Sobic003G386800--Sobic008G075350 Sobic010G090100 Sobic010G090100 Sobic003G386800--Sobic010G090100 Sobic010G063033 Sobic010G063033 Sobic004G106600--Sobic010G063033 Sobic003G399700 Sobic003G399700 Sobic004G106600--Sobic003G399700 Sobic003G264400 Sobic003G264400 Sobic004G106600--Sobic003G264400 Sobic009G240600 Sobic009G240600 Sobic004G106600--Sobic009G240600 Sobic002G184200 Sobic002G184200 Sobic004G106600--Sobic002G184200 Sobic001G256800 Sobic001G256800 Sobic004G106600--Sobic001G256800 Sobic010G084300 Sobic010G084300 Sobic004G106600--Sobic010G084300 Sobic004G127200 Sobic004G127200 Sobic004G106600--Sobic004G127200 Sobic002G354200 Sobic002G354200 Sobic004G106600--Sobic002G354200 Sobic002G074200--Sobic005G080900 Sobic003G160700 Sobic003G160700 Sobic002G074200--Sobic003G160700 Sobic002G372400 Sobic002G372400 Sobic002G074200--Sobic002G372400 Sobic006G159600 Sobic006G159600 Sobic002G074200--Sobic006G159600 Sobic006G067800 Sobic006G067800 Sobic002G074200--Sobic006G067800 Sobic003G078200 Sobic003G078200 Sobic002G074200--Sobic003G078200 Sobic003G436700 Sobic003G436700 Sobic002G074200--Sobic003G436700 Sobic010G076400 Sobic010G076400 Sobic002G074200--Sobic010G076400 Sobic006G137800 Sobic006G137800 Sobic002G074200--Sobic006G137800
Octagon: transcription factors


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