Gene annotation
Transcriptome id Sobic.004G222900.1
Synonym
Functional annotation -
UniProt A0A194YR64
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G004600 expressed protein -
2 Sobic.004G347500 2-phosphoglycerate kinase-related, putative, expressed -
3 Sobic.007G168100 peptidyl-prolyl cis-trans isomerase, putative, expressed -
4 Sobic.001G261420 - -
5 Sobic.007G191500 - -
6 Sobic.001G386600 homeobox domain containing protein, expressed -
7 Sobic.006G095900 OsSCP60 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
8 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
9 Sobic.003G011800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase
10 Sobic.006G055900 expressed protein -
11 Sobic.001G254800 cytochrome P450, putative, expressed -
12 Sobic.001G534200 - -
13 Sobic.001G381000 - -
14 Sobic.002G163301 - -
15 Sobic.009G025500 OsRCI2-7 - Putative low temperature and salt responsive protein, expressed -
16 Sobic.010G198900 phytosulfokines 1 precursor, putative, expressed -
17 Sobic.006G167700 oleosin, putative, expressed -
18 Sobic.002G184700 expressed protein -
19 Sobic.001G208500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
20 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic004G222900 Sobic004G222900 Sobic001G004600 Sobic001G004600 Sobic004G222900--Sobic001G004600 Sobic004G347500 Sobic004G347500 Sobic004G222900--Sobic004G347500 Sobic007G168100 Sobic007G168100 Sobic004G222900--Sobic007G168100 Sobic001G261420 Sobic001G261420 Sobic004G222900--Sobic001G261420 Sobic007G191500 Sobic007G191500 Sobic004G222900--Sobic007G191500 Sobic001G386600 Sobic001G386600 Sobic004G222900--Sobic001G386600 Sobic006G095900 Sobic006G095900 Sobic004G222900--Sobic006G095900 Sobic005G021000 Sobic005G021000 Sobic004G222900--Sobic005G021000 Sobic003G011800 Sobic003G011800 Sobic004G222900--Sobic003G011800 Sobic009G025500 Sobic009G025500 Sobic001G004600--Sobic009G025500 Sobic001G004600--Sobic001G261420 Sobic001G165600 Sobic001G165600 Sobic001G004600--Sobic001G165600 Sobic001G122600 Sobic001G122600 Sobic001G004600--Sobic001G122600 Sobic004G347500--Sobic005G021000 Sobic002G177600 Sobic002G177600 Sobic004G347500--Sobic002G177600 Sobic002G240000 Sobic002G240000 Sobic004G347500--Sobic002G240000 Sobic004G347500--Sobic001G004600 Sobic001G534200 Sobic001G534200 Sobic004G347500--Sobic001G534200 Sobic002G232900 Sobic002G232900 Sobic004G347500--Sobic002G232900 Sobic004G347500--Sobic007G191500 Sobic006G217800 Sobic006G217800 Sobic004G347500--Sobic006G217800 Sobic004G347500--Sobic001G386600 Sobic001G544400 Sobic001G544400 Sobic007G168100--Sobic001G544400 Sobic004G301800 Sobic004G301800 Sobic007G168100--Sobic004G301800 Sobic006G055900 Sobic006G055900 Sobic007G168100--Sobic006G055900 Sobic004G281700 Sobic004G281700 Sobic007G168100--Sobic004G281700 Sobic010G074940 Sobic010G074940 Sobic007G168100--Sobic010G074940 Sobic001G418500 Sobic001G418500 Sobic007G168100--Sobic001G418500 Sobic010G142900 Sobic010G142900 Sobic007G168100--Sobic010G142900 Sobic001G380800 Sobic001G380800 Sobic007G168100--Sobic001G380800 Sobic003G295600 Sobic003G295600 Sobic007G168100--Sobic003G295600 Sobic002G204350 Sobic002G204350 Sobic001G261420--Sobic002G204350 Sobic001G261420--Sobic007G191500 Sobic001G261420--Sobic001G122600 Sobic007G191500--Sobic001G261420 Sobic007G191500--Sobic001G122600 Sobic001G386600--Sobic001G261420 Sobic008G075350 Sobic008G075350 Sobic001G386600--Sobic008G075350 Sobic001G386600--Sobic007G191500 Sobic001G386600--Sobic002G204350 Sobic001G386600--Sobic001G004600 Sobic001G386600--Sobic005G021000 Sobic001G386600--Sobic004G347500 Sobic001G386600--Sobic001G165600 Sobic001G386600--Sobic001G122600 Sobic004G349550 Sobic004G349550 Sobic006G095900--Sobic004G349550 Sobic005G184700 Sobic005G184700 Sobic006G095900--Sobic005G184700 Sobic006G095900--Sobic001G165600 Sobic008G149300 Sobic008G149300 Sobic006G095900--Sobic008G149300 Sobic005G184800 Sobic005G184800 Sobic006G095900--Sobic005G184800 Sobic009G246250 Sobic009G246250 Sobic006G095900--Sobic009G246250 Sobic006G095900--Sobic001G122600 Sobic001G254800 Sobic001G254800 Sobic005G021000--Sobic001G254800 Sobic005G021000--Sobic006G217800 Sobic003G443400 Sobic003G443400 Sobic005G021000--Sobic003G443400 Sobic007G025600 Sobic007G025600 Sobic005G021000--Sobic007G025600 Sobic005G021000--Sobic008G149300 Sobic005G021000--Sobic001G534200 Sobic009G103800 Sobic009G103800 Sobic005G021000--Sobic009G103800 Sobic006G167700 Sobic006G167700 Sobic005G021000--Sobic006G167700 Sobic001G166900 Sobic001G166900 Sobic005G021000--Sobic001G166900 Sobic003G011800--Sobic001G386600 Sobic003G011800--Sobic001G261420 Sobic003G011800--Sobic004G347500 Sobic003G011800--Sobic005G021000 Sobic003G011800--Sobic003G443400 Sobic003G011800--Sobic006G095900 Sobic003G011800--Sobic007G191500 Sobic003G011800--Sobic001G254800 Sobic003G011800--Sobic001G004600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.