Gene annotation
Transcriptome id Sobic.001G034900.1,Sobic.001G034900.2
Synonym ADF3, Sb01g003260
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
actin-depolymerizing factor, putative, expressed
UniProt A0A1B6QH80 , C5WV16
Pfam PF00241
Panther DB PTHR11913 PTHR11913:SF27
NCBI CDD KOG1735; Actin depolymerizing factor
KEGG Orthology K05765; cofilin
Gene Ontology GO:0005622; intracellular GO:0003779actin binding GO:0015629actin cytoskeleton


Orthologs (automatic annotation)
TAIR AT5G59880 : actin depolymerizing factor 3
RAP-DB (Rice) LOC_Os03g60580.1 : actin-depolymerizing factor, putative, expressed
MaizeGDB (Corn) Zm00025a008803
Brachypodium KQK12440
Barley HORVU5Hr1G045750.1
Wheat TraesCS5B02G491800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G073750 - -
2 Sobic.002G389100 cytochrome P450 72A1, putative, expressed -
3 Sobic.009G158500 - -
4 Sobic.010G221800 Phosphoglycerate kinase(PubMedID : 26186930)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
5 Sobic.010G070750 - -
6 Sobic.002G210401 - -
7 Sobic.001G508400 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.002G318100 expressed protein -
9 Sobic.006G012800 Up-reguralion under heat(PubMedID : 24916767)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
10 Sobic.008G123801 - -
11 Sobic.001G409400 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@OsRCI2-5 - Putative low temperature and salt responsive protein, expressed -
12 Sobic.009G015500 - -
13 Sobic.002G269600 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
14 Sobic.006G142000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.001G343500 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
16 Sobic.009G006500 integral membrane protein DUF6 containing protein, expressed -
17 Sobic.002G024650 - -
18 Sobic.004G191000 Up-reguralion under drought(PubMedID : 24916767)@cytokinin-O-glucosyltransferase 2, putative, expressed -
19 Sobic.009G158600 - -
20 Sobic.005G045500 carrier, putative, expressed -


Gene co-expression network
sample Sobic001G034900 Sobic001G034900 Sobic003G073750 Sobic003G073750 Sobic001G034900--Sobic003G073750 Sobic002G389100 Sobic002G389100 Sobic001G034900--Sobic002G389100 Sobic009G158500 Sobic009G158500 Sobic001G034900--Sobic009G158500 Sobic010G221800 Sobic010G221800 Sobic001G034900--Sobic010G221800 Sobic010G070750 Sobic010G070750 Sobic001G034900--Sobic010G070750 Sobic002G210401 Sobic002G210401 Sobic001G034900--Sobic002G210401 Sobic001G508400 Sobic001G508400 Sobic001G034900--Sobic001G508400 Sobic002G318100 Sobic002G318100 Sobic001G034900--Sobic002G318100 Sobic006G012800 Sobic006G012800 Sobic001G034900--Sobic006G012800 Sobic007G020900 Sobic007G020900 Sobic003G073750--Sobic007G020900 Sobic008G123801 Sobic008G123801 Sobic003G073750--Sobic008G123801 Sobic003G073750--Sobic001G034900 Sobic009G154700 Sobic009G154700 Sobic003G073750--Sobic009G154700 Sobic002G067700 Sobic002G067700 Sobic003G073750--Sobic002G067700 Sobic005G169000 Sobic005G169000 Sobic003G073750--Sobic005G169000 Sobic002G024650 Sobic002G024650 Sobic003G073750--Sobic002G024650 Sobic010G006000 Sobic010G006000 Sobic003G073750--Sobic010G006000 Sobic002G416900 Sobic002G416900 Sobic003G073750--Sobic002G416900 Sobic002G389100--Sobic001G508400 Sobic002G416500 Sobic002G416500 Sobic002G389100--Sobic002G416500 Sobic004G261400 Sobic004G261400 Sobic002G389100--Sobic004G261400 Sobic009G073800 Sobic009G073800 Sobic002G389100--Sobic009G073800 Sobic002G389100--Sobic006G012800 Sobic002G307600 Sobic002G307600 Sobic002G389100--Sobic002G307600 Sobic010G067400 Sobic010G067400 Sobic002G389100--Sobic010G067400 Sobic004G126700 Sobic004G126700 Sobic002G389100--Sobic004G126700 Sobic002G389100--Sobic009G158500 Sobic006G181900 Sobic006G181900 Sobic009G158500--Sobic006G181900 Sobic009G158500--Sobic001G508400 Sobic009G015500 Sobic009G015500 Sobic009G158500--Sobic009G015500 Sobic009G006500 Sobic009G006500 Sobic009G158500--Sobic009G006500 Sobic009G158500--Sobic006G012800 Sobic001G101600 Sobic001G101600 Sobic009G158500--Sobic001G101600 Sobic009G158500--Sobic002G416500 Sobic007G058600 Sobic007G058600 Sobic009G158500--Sobic007G058600 Sobic009G158500--Sobic010G070750 Sobic001G205800 Sobic001G205800 Sobic010G221800--Sobic001G205800 Sobic001G385900 Sobic001G385900 Sobic010G221800--Sobic001G385900 Sobic008G034300 Sobic008G034300 Sobic010G221800--Sobic008G034300 Sobic008G170500 Sobic008G170500 Sobic010G221800--Sobic008G170500 Sobic010G164400 Sobic010G164400 Sobic010G221800--Sobic010G164400 Sobic009G111400 Sobic009G111400 Sobic010G221800--Sobic009G111400 Sobic006G245500 Sobic006G245500 Sobic010G221800--Sobic006G245500 Sobic010G221800--Sobic002G389100 Sobic002G231000 Sobic002G231000 Sobic010G221800--Sobic002G231000 Sobic007G164500 Sobic007G164500 Sobic010G070750--Sobic007G164500 Sobic001G323600 Sobic001G323600 Sobic010G070750--Sobic001G323600 Sobic003G024600 Sobic003G024600 Sobic010G070750--Sobic003G024600 Sobic001G373600 Sobic001G373600 Sobic010G070750--Sobic001G373600 Sobic001G466450 Sobic001G466450 Sobic010G070750--Sobic001G466450 Sobic008G063400 Sobic008G063400 Sobic002G210401--Sobic008G063400 Sobic001G403000 Sobic001G403000 Sobic002G210401--Sobic001G403000 Sobic006G044100 Sobic006G044100 Sobic002G210401--Sobic006G044100 Sobic003G437200 Sobic003G437200 Sobic002G210401--Sobic003G437200 Sobic003G264400 Sobic003G264400 Sobic002G210401--Sobic003G264400 Sobic005G206601 Sobic005G206601 Sobic002G210401--Sobic005G206601 Sobic009G061200 Sobic009G061200 Sobic002G210401--Sobic009G061200 Sobic006G277600 Sobic006G277600 Sobic002G210401--Sobic006G277600 Sobic010G084300 Sobic010G084300 Sobic002G210401--Sobic010G084300 Sobic001G508400--Sobic009G158500 Sobic001G508400--Sobic006G181900 Sobic001G508400--Sobic002G416500 Sobic001G508400--Sobic009G015500 Sobic001G508400--Sobic002G389100 Sobic009G158600 Sobic009G158600 Sobic001G508400--Sobic009G158600 Sobic001G508400--Sobic009G006500 Sobic001G508400--Sobic007G058600 Sobic001G508400--Sobic006G012800 Sobic003G079400 Sobic003G079400 Sobic002G318100--Sobic003G079400 Sobic009G187200 Sobic009G187200 Sobic002G318100--Sobic009G187200 Sobic001G082600 Sobic001G082600 Sobic002G318100--Sobic001G082600 Sobic003G316000 Sobic003G316000 Sobic002G318100--Sobic003G316000 Sobic008G106700 Sobic008G106700 Sobic002G318100--Sobic008G106700 Sobic004G046200 Sobic004G046200 Sobic002G318100--Sobic004G046200 Sobic002G318100--Sobic006G044100 Sobic005G168800 Sobic005G168800 Sobic002G318100--Sobic005G168800 Sobic003G016100 Sobic003G016100 Sobic002G318100--Sobic003G016100 Sobic006G012800--Sobic009G158500 Sobic006G012800--Sobic001G508400 Sobic006G012800--Sobic002G389100 Sobic006G074200 Sobic006G074200 Sobic006G012800--Sobic006G074200 Sobic006G012800--Sobic002G416500 Sobic004G185100 Sobic004G185100 Sobic006G012800--Sobic004G185100 Sobic006G012800--Sobic002G318100 Sobic001G364400 Sobic001G364400 Sobic006G012800--Sobic001G364400 Sobic006G012800--Sobic006G181900
Octagon: transcription factors


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