Gene annotation
| Transcriptome id | Sobic.001G409400.1 |
|---|---|
| Synonym | Sb01g038670 |
| Functional annotation | Up-reguralion under drought (PubMedID : 24916767) Up-reguralion under heat (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) OsRCI2-5 - Putative low temperature and salt responsive protein, expressed |
| UniProt | C5WNL0 |
| Pfam | PF01679 |
| Panther DB | PTHR21659 PTHR21659:SF23 |
| NCBI CDD | KOG1773; Stress responsive protein |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT2G38905 : Low temperature and salt responsive protein family |
|---|---|
| RAP-DB (Rice) | LOC_Os03g17790.1 : OsRCI2-5 - Putative low temperature and salt responsive protein, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G046200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed | - |
| 2 | Sobic.004G308300 | xyloglucan fucosyltransferase, putative, expressed | K13681: xyloglucan fucosyltransferase |
| 3 | Sobic.007G164500 | - | - |
| 4 | Sobic.003G244100 | "ABA-Responsive Element (ABRE) -binding factor BZ-1 basic-leucine zipper, maped into a stay green QTL (QSTG12_3"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@transcription factor, putative, expressed | K09060: plant G-box-binding factor |
| 5 | Sobic.001G323600 | transporter family protein, putative, expressed | - |
| 6 | Sobic.010G070750 | - | - |
| 7 | Sobic.001G373600 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 8 | Sobic.003G024600 | CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 9 | Sobic.002G097000 | expressed protein | - |
| 10 | Sobic.001G466450 | - | - |
| 11 | Sobic.001G466450 | - | - |
| 12 | Sobic.001G466450 | - | - |
| 13 | Sobic.001G466450 | - | - |
| 14 | Sobic.001G466450 | - | - |
| 15 | Sobic.001G466450 | - | - |
| 16 | Sobic.001G466450 | - | - |
| 17 | Sobic.006G104000 | ethylene-insensitive 3, putative, expressed | K14514: ethylene-insensitive protein 3 |
| 18 | Sobic.004G101400 | Up-reguralion under drought(PubMedID : 24916767)@HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 19 | Sobic.009G116700 | "dehydrin SbDHN1, maps into mapped into a stay green mQTL (QSTG meta1.9)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@rab16/17 homolog(PubMedID : 15579713)@dehydrin, putative, expressed | - |
| 20 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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