Gene annotation
Transcriptome id Sobic.008G034300.2
Synonym
Functional annotation expressed protein
UniProt A0A1B6PBC4
Pfam -
Panther DB PTHR12626 PTHR12626:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10020 : -
RAP-DB (Rice) LOC_Os11g05170.1 : expressed protein
MaizeGDB (Corn) Zm00025a053862
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.008G034300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G205800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lanC-like protein 2, putative, expressed -
2 Sobic.006G245500 down-regulated TF in developmental senescence(PubMedID : 27586543)@AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
3 Sobic.003G353300 expressed protein -
4 Sobic.004G133500 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
5 Sobic.009G205100 zinc finger/CCCH transcription factor, putative, expressed -
6 Sobic.009G152600 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
7 Sobic.003G128700 flavin monooxygenase, putative, expressed -
8 Sobic.010G221800 Phosphoglycerate kinase(PubMedID : 26186930)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
9 Sobic.002G242300 (54.2% identity with SbCCoAOMT/70.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K00588: caffeoyl-CoA O-methyltransferase
10 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
11 Sobic.004G301300 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.008G111500 membrane associated DUF588 domain containing protein, putative, expressed -
13 Sobic.008G170500 AGC_PVPK_like_kin82y.20 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
14 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -
15 Sobic.001G385900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@stress responsive protein, putative, expressed -
16 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
17 Sobic.001G097600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@"salidroside biosynthesis, ethanol degradation II, phytol degradation"(PubMedID : 21853065)@dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
18 Sobic.004G117600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY39, expressed -
19 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
20 Sobic.001G397100 expressed protein -


Gene co-expression network
sample Sobic008G034300 Sobic008G034300 Sobic001G205800 Sobic001G205800 Sobic008G034300--Sobic001G205800 Sobic006G245500 Sobic006G245500 Sobic008G034300--Sobic006G245500 Sobic003G353300 Sobic003G353300 Sobic008G034300--Sobic003G353300 Sobic004G133500 Sobic004G133500 Sobic008G034300--Sobic004G133500 Sobic009G205100 Sobic009G205100 Sobic008G034300--Sobic009G205100 Sobic009G152600 Sobic009G152600 Sobic008G034300--Sobic009G152600 Sobic003G128700 Sobic003G128700 Sobic008G034300--Sobic003G128700 Sobic010G221800 Sobic010G221800 Sobic008G034300--Sobic010G221800 Sobic002G242300 Sobic002G242300 Sobic008G034300--Sobic002G242300 Sobic008G170500 Sobic008G170500 Sobic001G205800--Sobic008G170500 Sobic001G385900 Sobic001G385900 Sobic001G205800--Sobic001G385900 Sobic001G205800--Sobic008G034300 Sobic001G205800--Sobic006G245500 Sobic001G205800--Sobic010G221800 Sobic010G164400 Sobic010G164400 Sobic001G205800--Sobic010G164400 Sobic001G205800--Sobic003G128700 Sobic003G386800 Sobic003G386800 Sobic001G205800--Sobic003G386800 Sobic003G300900 Sobic003G300900 Sobic001G205800--Sobic003G300900 Sobic006G245500--Sobic008G170500 Sobic006G245500--Sobic003G128700 Sobic006G245500--Sobic003G300900 Sobic006G245500--Sobic008G034300 Sobic010G090100 Sobic010G090100 Sobic006G245500--Sobic010G090100 Sobic006G245500--Sobic001G205800 Sobic001G397100 Sobic001G397100 Sobic006G245500--Sobic001G397100 Sobic008G135500 Sobic008G135500 Sobic006G245500--Sobic008G135500 Sobic001G197800 Sobic001G197800 Sobic006G245500--Sobic001G197800 Sobic008G118700 Sobic008G118700 Sobic003G353300--Sobic008G118700 Sobic003G353300--Sobic009G152600 Sobic002G068600 Sobic002G068600 Sobic003G353300--Sobic002G068600 Sobic003G086600 Sobic003G086600 Sobic003G353300--Sobic003G086600 Sobic001G149800 Sobic001G149800 Sobic003G353300--Sobic001G149800 Sobic001G254100 Sobic001G254100 Sobic003G353300--Sobic001G254100 Sobic004G166200 Sobic004G166200 Sobic003G353300--Sobic004G166200 Sobic001G405500 Sobic001G405500 Sobic003G353300--Sobic001G405500 Sobic001G201200 Sobic001G201200 Sobic003G353300--Sobic001G201200 Sobic004G064900 Sobic004G064900 Sobic004G133500--Sobic004G064900 Sobic004G247200 Sobic004G247200 Sobic004G133500--Sobic004G247200 Sobic004G133500--Sobic008G034300 Sobic001G371900 Sobic001G371900 Sobic004G133500--Sobic001G371900 Sobic007G195800 Sobic007G195800 Sobic004G133500--Sobic007G195800 Sobic002G421800 Sobic002G421800 Sobic004G133500--Sobic002G421800 Sobic003G072300 Sobic003G072300 Sobic004G133500--Sobic003G072300 Sobic004G117600 Sobic004G117600 Sobic004G133500--Sobic004G117600 Sobic002G199650 Sobic002G199650 Sobic004G133500--Sobic002G199650 Sobic003G247800 Sobic003G247800 Sobic009G205100--Sobic003G247800 Sobic001G076100 Sobic001G076100 Sobic009G205100--Sobic001G076100 Sobic001G488000 Sobic001G488000 Sobic009G205100--Sobic001G488000 Sobic009G205100--Sobic003G353300 Sobic003G123600 Sobic003G123600 Sobic009G205100--Sobic003G123600 Sobic009G205100--Sobic008G118700 Sobic003G148600 Sobic003G148600 Sobic009G205100--Sobic003G148600 Sobic009G205100--Sobic001G149800 Sobic001G443800 Sobic001G443800 Sobic009G205100--Sobic001G443800 Sobic009G152600--Sobic003G353300 Sobic009G021600 Sobic009G021600 Sobic009G152600--Sobic009G021600 Sobic008G186100 Sobic008G186100 Sobic009G152600--Sobic008G186100 Sobic003G393900 Sobic003G393900 Sobic009G152600--Sobic003G393900 Sobic009G152600--Sobic003G086600 Sobic009G152600--Sobic008G118700 Sobic001G031700 Sobic001G031700 Sobic009G152600--Sobic001G031700 Sobic003G377100 Sobic003G377100 Sobic009G152600--Sobic003G377100 Sobic009G152600--Sobic001G405500 Sobic003G128700--Sobic003G300900 Sobic003G128700--Sobic006G245500 Sobic003G128700--Sobic008G170500 Sobic003G128700--Sobic003G386800 Sobic003G128700--Sobic001G397100 Sobic003G128700--Sobic008G135500 Sobic003G128700--Sobic010G090100 Sobic003G128700--Sobic002G242300 Sobic003G128700--Sobic008G034300 Sobic010G221800--Sobic001G205800 Sobic010G221800--Sobic001G385900 Sobic010G221800--Sobic008G034300 Sobic010G221800--Sobic008G170500 Sobic010G221800--Sobic010G164400 Sobic009G111400 Sobic009G111400 Sobic010G221800--Sobic009G111400 Sobic010G221800--Sobic006G245500 Sobic002G389100 Sobic002G389100 Sobic010G221800--Sobic002G389100 Sobic002G231000 Sobic002G231000 Sobic010G221800--Sobic002G231000 Sobic002G242300--Sobic001G397100 Sobic002G242300--Sobic009G021600 Sobic002G242300--Sobic003G300900 Sobic006G261900 Sobic006G261900 Sobic002G242300--Sobic006G261900 Sobic002G242300--Sobic009G152600 Sobic002G123500 Sobic002G123500 Sobic002G242300--Sobic002G123500 Sobic002G242300--Sobic006G245500 Sobic003G109600 Sobic003G109600 Sobic002G242300--Sobic003G109600 Sobic004G262200 Sobic004G262200 Sobic002G242300--Sobic004G262200
Octagon: transcription factors


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