Gene annotation
Transcriptome id Sobic.003G353300.1
Synonym DVL11, RTFL8
Functional annotation expressed protein
UniProt A0A1B6Q6Z8
Pfam PF08137
Panther DB PTHR33102
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39705 : ROTUNDIFOLIA like 8
RAP-DB (Rice) LOC_Os01g62605.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQK10536
Barley HORVU5Hr1G020880.1 , HORVU3Hr1G086090.1 , HORVU3Hr1G086090.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G118700 respiratory burst oxidase, putative, expressed -
2 Sobic.009G152600 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
3 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
4 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
5 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
6 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
7 Sobic.004G166200 expressed protein -
8 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
9 Sobic.001G201200 - -
10 Sobic.003G394400 ubiquitin family protein, putative, expressed -
11 Sobic.001G169500 - -
12 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
15 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
16 Sobic.002G261200 expressed protein -
17 Sobic.007G214600 EF hand family protein, putative, expressed -
18 Sobic.001G371800 expressed protein -
19 Sobic.007G214400 EF hand family protein, putative, expressed -
20 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -


Gene co-expression network
sample Sobic003G353300 Sobic003G353300 Sobic008G118700 Sobic008G118700 Sobic003G353300--Sobic008G118700 Sobic009G152600 Sobic009G152600 Sobic003G353300--Sobic009G152600 Sobic002G068600 Sobic002G068600 Sobic003G353300--Sobic002G068600 Sobic003G086600 Sobic003G086600 Sobic003G353300--Sobic003G086600 Sobic001G149800 Sobic001G149800 Sobic003G353300--Sobic001G149800 Sobic001G254100 Sobic001G254100 Sobic003G353300--Sobic001G254100 Sobic004G166200 Sobic004G166200 Sobic003G353300--Sobic004G166200 Sobic001G405500 Sobic001G405500 Sobic003G353300--Sobic001G405500 Sobic001G201200 Sobic001G201200 Sobic003G353300--Sobic001G201200 Sobic003G377100 Sobic003G377100 Sobic008G118700--Sobic003G377100 Sobic008G118700--Sobic002G068600 Sobic001G107800 Sobic001G107800 Sobic008G118700--Sobic001G107800 Sobic008G118700--Sobic001G201200 Sobic008G118700--Sobic001G254100 Sobic008G118700--Sobic001G149800 Sobic001G371800 Sobic001G371800 Sobic008G118700--Sobic001G371800 Sobic003G148600 Sobic003G148600 Sobic008G118700--Sobic003G148600 Sobic008G118700--Sobic003G353300 Sobic009G152600--Sobic003G353300 Sobic009G021600 Sobic009G021600 Sobic009G152600--Sobic009G021600 Sobic008G186100 Sobic008G186100 Sobic009G152600--Sobic008G186100 Sobic003G393900 Sobic003G393900 Sobic009G152600--Sobic003G393900 Sobic009G152600--Sobic003G086600 Sobic009G152600--Sobic008G118700 Sobic001G031700 Sobic001G031700 Sobic009G152600--Sobic001G031700 Sobic009G152600--Sobic003G377100 Sobic009G152600--Sobic001G405500 Sobic003G394400 Sobic003G394400 Sobic002G068600--Sobic003G394400 Sobic002G068600--Sobic003G086600 Sobic002G068600--Sobic004G166200 Sobic002G068600--Sobic001G254100 Sobic002G068600--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic002G068600--Sobic002G261200 Sobic007G026600 Sobic007G026600 Sobic002G068600--Sobic007G026600 Sobic007G214400 Sobic007G214400 Sobic002G068600--Sobic007G214400 Sobic010G032100 Sobic010G032100 Sobic002G068600--Sobic010G032100 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic003G086600--Sobic001G405500 Sobic001G108200 Sobic001G108200 Sobic003G086600--Sobic001G108200 Sobic003G086600--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic003G086600--Sobic003G382800 Sobic003G355100 Sobic003G355100 Sobic003G086600--Sobic003G355100 Sobic001G397200 Sobic001G397200 Sobic003G086600--Sobic001G397200 Sobic003G086600--Sobic007G026600 Sobic001G149800--Sobic010G032100 Sobic001G149800--Sobic002G068600 Sobic010G031100 Sobic010G031100 Sobic001G149800--Sobic010G031100 Sobic001G149800--Sobic003G394400 Sobic001G149800--Sobic003G086600 Sobic001G149800--Sobic001G254100 Sobic001G149800--Sobic001G107800 Sobic001G481500 Sobic001G481500 Sobic001G149800--Sobic001G481500 Sobic001G309600 Sobic001G309600 Sobic001G149800--Sobic001G309600 Sobic001G254100--Sobic002G068600 Sobic001G254100--Sobic001G107800 Sobic001G254100--Sobic003G394400 Sobic001G254100--Sobic002G261200 Sobic001G254100--Sobic004G166200 Sobic001G254100--Sobic001G149800 Sobic001G254100--Sobic007G214400 Sobic002G389000 Sobic002G389000 Sobic001G254100--Sobic002G389000 Sobic001G254100--Sobic003G086600 Sobic004G166200--Sobic003G394400 Sobic004G166200--Sobic002G068600 Sobic004G166200--Sobic003G148600 Sobic004G166200--Sobic001G371800 Sobic007G214600 Sobic007G214600 Sobic004G166200--Sobic007G214600 Sobic004G166200--Sobic001G107800 Sobic004G166200--Sobic003G355100 Sobic004G166200--Sobic003G382800 Sobic003G197200 Sobic003G197200 Sobic004G166200--Sobic003G197200 Sobic001G405500--Sobic003G086600 Sobic001G405500--Sobic003G148600 Sobic001G405500--Sobic003G394400 Sobic001G405500--Sobic001G108200 Sobic001G405500--Sobic007G026600 Sobic003G144700 Sobic003G144700 Sobic001G405500--Sobic003G144700 Sobic001G405500--Sobic003G355100 Sobic001G405500--Sobic003G382800 Sobic006G267200 Sobic006G267200 Sobic001G405500--Sobic006G267200 Sobic001G443800 Sobic001G443800 Sobic001G201200--Sobic001G443800 Sobic001G201200--Sobic001G371800 Sobic001G201200--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic001G201200--Sobic010G198500 Sobic001G076100 Sobic001G076100 Sobic001G201200--Sobic001G076100 Sobic001G201200--Sobic007G214600 Sobic001G201200--Sobic001G107800 Sobic001G201200--Sobic003G148600 Sobic007G147700 Sobic007G147700 Sobic001G201200--Sobic007G147700
Octagon: transcription factors


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