Gene annotation
Transcriptome id Sobic.004G266000.1
Synonym Sb04g030400
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
universal stress protein domain containing protein, putative, expressed
UniProt C5Y0A3
Pfam PF00582
Panther DB PTHR31964 PTHR31964:SF49
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006950; response to stress


Orthologs (automatic annotation)
TAIR AT5G14680 : Adenine nucleotide alpha hydrolases-like superfamily protein
RAP-DB (Rice) LOC_Os02g47840.1 : universal stress protein domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a032476
Brachypodium KQK00958
Barley HORVU6Hr1G069260.1 , HORVU6Hr1G069260.2
Wheat TraesCS6A02G274200 , TraesCS6B02G312700 , TraesCS6D02G254400 , TraesCS6B02G301700
Populus -


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cDNA sequences
Sobic.004G266000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G421200 IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.010G243200 ZOS6-08 - C2H2 zinc finger protein, expressed K14816: pre-60S factor REI1
3 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
4 Sobic.006G211200 expressed protein -
5 Sobic.006G138200 nodulin, putative, expressed -
6 Sobic.010G257100 CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
7 Sobic.003G321700 KH domain containing protein, putative, expressed K11884: PNO1, RNA-binding protein PNO1
8 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
9 Sobic.001G009500 - -
10 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
11 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
12 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
13 Sobic.002G312400 domain of unknown function domain containing protein, expressed -
14 Sobic.002G282400 expressed protein -
15 Sobic.001G070800 expressed protein -
16 Sobic.009G230100 expressed protein -
17 Sobic.001G335400 protein of unknown function DUF1675 domain containing protein, expressed -
18 Sobic.009G232000 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
19 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
20 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase


Gene co-expression network
sample Sobic004G266000 Sobic004G266000 Sobic002G421200 Sobic002G421200 Sobic004G266000--Sobic002G421200 Sobic010G243200 Sobic010G243200 Sobic004G266000--Sobic010G243200 Sobic002G414600 Sobic002G414600 Sobic004G266000--Sobic002G414600 Sobic006G211200 Sobic006G211200 Sobic004G266000--Sobic006G211200 Sobic006G138200 Sobic006G138200 Sobic004G266000--Sobic006G138200 Sobic010G257100 Sobic010G257100 Sobic004G266000--Sobic010G257100 Sobic003G321700 Sobic003G321700 Sobic004G266000--Sobic003G321700 Sobic002G187500 Sobic002G187500 Sobic004G266000--Sobic002G187500 Sobic001G009500 Sobic001G009500 Sobic004G266000--Sobic001G009500 Sobic009G161500 Sobic009G161500 Sobic002G421200--Sobic009G161500 Sobic001G252300 Sobic001G252300 Sobic002G421200--Sobic001G252300 Sobic002G312900 Sobic002G312900 Sobic002G421200--Sobic002G312900 Sobic005G084600 Sobic005G084600 Sobic002G421200--Sobic005G084600 Sobic003G117600 Sobic003G117600 Sobic002G421200--Sobic003G117600 Sobic007G141500 Sobic007G141500 Sobic002G421200--Sobic007G141500 Sobic004G166700 Sobic004G166700 Sobic002G421200--Sobic004G166700 Sobic001G070800 Sobic001G070800 Sobic002G421200--Sobic001G070800 Sobic007G087200 Sobic007G087200 Sobic002G421200--Sobic007G087200 Sobic006G141500 Sobic006G141500 Sobic010G243200--Sobic006G141500 Sobic002G282400 Sobic002G282400 Sobic010G243200--Sobic002G282400 Sobic002G218000 Sobic002G218000 Sobic010G243200--Sobic002G218000 Sobic003G350300 Sobic003G350300 Sobic010G243200--Sobic003G350300 Sobic010G243200--Sobic003G321700 Sobic001G177800 Sobic001G177800 Sobic010G243200--Sobic001G177800 Sobic003G181500 Sobic003G181500 Sobic010G243200--Sobic003G181500 Sobic001G288800 Sobic001G288800 Sobic010G243200--Sobic001G288800 Sobic010G243200--Sobic002G187500 Sobic002G414600--Sobic001G252300 Sobic009G183400 Sobic009G183400 Sobic002G414600--Sobic009G183400 Sobic001G097600 Sobic001G097600 Sobic002G414600--Sobic001G097600 Sobic002G393000 Sobic002G393000 Sobic002G414600--Sobic002G393000 Sobic001G119400 Sobic001G119400 Sobic002G414600--Sobic001G119400 Sobic009G008900 Sobic009G008900 Sobic002G414600--Sobic009G008900 Sobic005G051200 Sobic005G051200 Sobic002G414600--Sobic005G051200 Sobic006G173900 Sobic006G173900 Sobic002G414600--Sobic006G173900 Sobic006G275200 Sobic006G275200 Sobic002G414600--Sobic006G275200 Sobic006G147000 Sobic006G147000 Sobic006G211200--Sobic006G147000 Sobic006G211200--Sobic003G321700 Sobic007G190800 Sobic007G190800 Sobic006G211200--Sobic007G190800 Sobic007G019000 Sobic007G019000 Sobic006G211200--Sobic007G019000 Sobic004G322200 Sobic004G322200 Sobic006G211200--Sobic004G322200 Sobic010G259900 Sobic010G259900 Sobic006G211200--Sobic010G259900 Sobic007G212600 Sobic007G212600 Sobic006G211200--Sobic007G212600 Sobic001G016400 Sobic001G016400 Sobic006G211200--Sobic001G016400 Sobic003G322400 Sobic003G322400 Sobic006G211200--Sobic003G322400 Sobic002G353000 Sobic002G353000 Sobic006G138200--Sobic002G353000 Sobic002G309400 Sobic002G309400 Sobic006G138200--Sobic002G309400 Sobic006G138200--Sobic004G266000 Sobic002G301400 Sobic002G301400 Sobic006G138200--Sobic002G301400 Sobic003G248600 Sobic003G248600 Sobic006G138200--Sobic003G248600 Sobic009G179200 Sobic009G179200 Sobic006G138200--Sobic009G179200 Sobic001G335400 Sobic001G335400 Sobic006G138200--Sobic001G335400 Sobic001G403700 Sobic001G403700 Sobic006G138200--Sobic001G403700 Sobic008G132800 Sobic008G132800 Sobic006G138200--Sobic008G132800 Sobic001G019900 Sobic001G019900 Sobic010G257100--Sobic001G019900 Sobic001G084900 Sobic001G084900 Sobic010G257100--Sobic001G084900 Sobic010G257100--Sobic003G321700 Sobic003G249800 Sobic003G249800 Sobic010G257100--Sobic003G249800 Sobic005G092800 Sobic005G092800 Sobic010G257100--Sobic005G092800 Sobic010G257100--Sobic010G243200 Sobic004G026400 Sobic004G026400 Sobic010G257100--Sobic004G026400 Sobic010G153100 Sobic010G153100 Sobic010G257100--Sobic010G153100 Sobic003G072300 Sobic003G072300 Sobic010G257100--Sobic003G072300 Sobic003G321700--Sobic007G212600 Sobic010G260100 Sobic010G260100 Sobic003G321700--Sobic010G260100 Sobic001G091801 Sobic001G091801 Sobic003G321700--Sobic001G091801 Sobic003G321700--Sobic007G190800 Sobic003G321700--Sobic003G322400 Sobic003G321700--Sobic010G259900 Sobic004G145801 Sobic004G145801 Sobic003G321700--Sobic004G145801 Sobic003G321700--Sobic006G147000 Sobic004G104100 Sobic004G104100 Sobic003G321700--Sobic004G104100 Sobic010G009300 Sobic010G009300 Sobic002G187500--Sobic010G009300 Sobic003G285800 Sobic003G285800 Sobic002G187500--Sobic003G285800 Sobic002G190900 Sobic002G190900 Sobic002G187500--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic002G187500--Sobic002G046100 Sobic002G187500--Sobic003G072300 Sobic002G187500--Sobic001G177800 Sobic002G081600 Sobic002G081600 Sobic002G187500--Sobic002G081600 Sobic001G281400 Sobic001G281400 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700 Sobic001G247600 Sobic001G247600 Sobic001G009500--Sobic001G247600 Sobic008G106700 Sobic008G106700 Sobic001G009500--Sobic008G106700 Sobic003G343900 Sobic003G343900 Sobic001G009500--Sobic003G343900 Sobic001G389000 Sobic001G389000 Sobic001G009500--Sobic001G389000 Sobic009G074100 Sobic009G074100 Sobic001G009500--Sobic009G074100 Sobic001G009500--Sobic001G119400 Sobic004G100700 Sobic004G100700 Sobic001G009500--Sobic004G100700 Sobic004G075000 Sobic004G075000 Sobic001G009500--Sobic004G075000 Sobic008G186100 Sobic008G186100 Sobic001G009500--Sobic008G186100
Octagon: transcription factors


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