Gene annotation
Transcriptome id Sobic.006G138200.3,Sobic.006G138200.1,Sobic.006G138200.2
Synonym Sb06g021760
Functional annotation nodulin, putative, expressed
UniProt C5YBK0 , A0A1Z5RE82
Pfam PF07690 PF06813
Panther DB PTHR21576 PTHR21576:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G80530 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os04g42420.1 : nodulin, putative, expressed
MaizeGDB (Corn) Zm00025a010773 , Zm00025a056422 , Zm00025a000788
Brachypodium KQJ83418 , KQJ83419 , PNT61404
Barley HORVU2Hr1G086920.1 , HORVU2Hr1G086920.2
Wheat TraesCS2B02G376600 , TraesCS2A02G357400 , TraesCS2D02G356200
Populus -


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cDNA sequences
Sobic.006G138200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G353000 5-formyltetrahydrofolate cyclo-ligase, putative, expressed K01934: 5-formyltetrahydrofolate cyclo-ligase
2 Sobic.002G309400 -(PubMedID : 26976818)@NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed K00028: malate dehydrogenase (decarboxylating)
3 Sobic.004G266000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
4 Sobic.002G301400 expressed protein -
5 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
6 Sobic.009G179200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
7 Sobic.001G335400 protein of unknown function DUF1675 domain containing protein, expressed -
8 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
9 Sobic.008G132800 expressed protein -
10 Sobic.003G261400 DUF292 domain containing protein, expressed -
11 Sobic.009G232000 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
12 Sobic.009G008600 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
13 Sobic.002G214900 polygalacturonase, putative, expressed -
14 Sobic.001G237500 transporter family protein, putative, expressed -
15 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
16 Sobic.004G107600 prefoldin subunit, putative, expressed K04798: pfdB, prefoldin beta subunit
17 Sobic.007G045600 MSP domain containing protein, expressed -
18 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
19 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
20 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)


Gene co-expression network
sample Sobic006G138200 Sobic006G138200 Sobic002G353000 Sobic002G353000 Sobic006G138200--Sobic002G353000 Sobic002G309400 Sobic002G309400 Sobic006G138200--Sobic002G309400 Sobic004G266000 Sobic004G266000 Sobic006G138200--Sobic004G266000 Sobic002G301400 Sobic002G301400 Sobic006G138200--Sobic002G301400 Sobic003G248600 Sobic003G248600 Sobic006G138200--Sobic003G248600 Sobic009G179200 Sobic009G179200 Sobic006G138200--Sobic009G179200 Sobic001G335400 Sobic001G335400 Sobic006G138200--Sobic001G335400 Sobic001G403700 Sobic001G403700 Sobic006G138200--Sobic001G403700 Sobic008G132800 Sobic008G132800 Sobic006G138200--Sobic008G132800 Sobic002G353000--Sobic002G301400 Sobic001G481700 Sobic001G481700 Sobic002G353000--Sobic001G481700 Sobic007G220900 Sobic007G220900 Sobic002G353000--Sobic007G220900 Sobic004G138800 Sobic004G138800 Sobic002G353000--Sobic004G138800 Sobic004G224900 Sobic004G224900 Sobic002G353000--Sobic004G224900 Sobic008G132400 Sobic008G132400 Sobic002G353000--Sobic008G132400 Sobic002G406500 Sobic002G406500 Sobic002G353000--Sobic002G406500 Sobic008G132700 Sobic008G132700 Sobic002G353000--Sobic008G132700 Sobic010G042800 Sobic010G042800 Sobic002G353000--Sobic010G042800 Sobic001G529000 Sobic001G529000 Sobic002G309400--Sobic001G529000 Sobic001G331900 Sobic001G331900 Sobic002G309400--Sobic001G331900 Sobic005G092800 Sobic005G092800 Sobic002G309400--Sobic005G092800 Sobic008G130400 Sobic008G130400 Sobic002G309400--Sobic008G130400 Sobic003G124800 Sobic003G124800 Sobic002G309400--Sobic003G124800 Sobic006G150600 Sobic006G150600 Sobic002G309400--Sobic006G150600 Sobic003G362400 Sobic003G362400 Sobic002G309400--Sobic003G362400 Sobic007G115100 Sobic007G115100 Sobic002G309400--Sobic007G115100 Sobic004G107600 Sobic004G107600 Sobic002G309400--Sobic004G107600 Sobic002G421200 Sobic002G421200 Sobic004G266000--Sobic002G421200 Sobic010G243200 Sobic010G243200 Sobic004G266000--Sobic010G243200 Sobic002G414600 Sobic002G414600 Sobic004G266000--Sobic002G414600 Sobic006G211200 Sobic006G211200 Sobic004G266000--Sobic006G211200 Sobic004G266000--Sobic006G138200 Sobic010G257100 Sobic010G257100 Sobic004G266000--Sobic010G257100 Sobic003G321700 Sobic003G321700 Sobic004G266000--Sobic003G321700 Sobic002G187500 Sobic002G187500 Sobic004G266000--Sobic002G187500 Sobic001G009500 Sobic001G009500 Sobic004G266000--Sobic001G009500 Sobic002G301400--Sobic002G353000 Sobic002G301400--Sobic003G124800 Sobic002G301400--Sobic001G529000 Sobic006G232200 Sobic006G232200 Sobic002G301400--Sobic006G232200 Sobic009G232400 Sobic009G232400 Sobic002G301400--Sobic009G232400 Sobic006G262900 Sobic006G262900 Sobic002G301400--Sobic006G262900 Sobic001G402300 Sobic001G402300 Sobic002G301400--Sobic001G402300 Sobic004G224800 Sobic004G224800 Sobic002G301400--Sobic004G224800 Sobic010G039800 Sobic010G039800 Sobic002G301400--Sobic010G039800 Sobic003G220600 Sobic003G220600 Sobic003G248600--Sobic003G220600 Sobic007G186300 Sobic007G186300 Sobic003G248600--Sobic007G186300 Sobic007G045600 Sobic007G045600 Sobic003G248600--Sobic007G045600 Sobic005G176000 Sobic005G176000 Sobic003G248600--Sobic005G176000 Sobic004G321900 Sobic004G321900 Sobic003G248600--Sobic004G321900 Sobic003G248600--Sobic001G403700 Sobic009G146100 Sobic009G146100 Sobic003G248600--Sobic009G146100 Sobic002G296300 Sobic002G296300 Sobic003G248600--Sobic002G296300 Sobic001G073000 Sobic001G073000 Sobic003G248600--Sobic001G073000 Sobic001G049200 Sobic001G049200 Sobic009G179200--Sobic001G049200 Sobic002G294200 Sobic002G294200 Sobic009G179200--Sobic002G294200 Sobic009G179200--Sobic001G403700 Sobic003G261400 Sobic003G261400 Sobic009G179200--Sobic003G261400 Sobic002G242500 Sobic002G242500 Sobic009G179200--Sobic002G242500 Sobic004G130900 Sobic004G130900 Sobic009G179200--Sobic004G130900 Sobic007G132700 Sobic007G132700 Sobic009G179200--Sobic007G132700 Sobic001G078800 Sobic001G078800 Sobic009G179200--Sobic001G078800 Sobic010G062800 Sobic010G062800 Sobic009G179200--Sobic010G062800 Sobic003G249800 Sobic003G249800 Sobic001G335400--Sobic003G249800 Sobic004G300900 Sobic004G300900 Sobic001G335400--Sobic004G300900 Sobic009G016201 Sobic009G016201 Sobic001G335400--Sobic009G016201 Sobic004G196300 Sobic004G196300 Sobic001G335400--Sobic004G196300 Sobic001G441600 Sobic001G441600 Sobic001G335400--Sobic001G441600 Sobic001G335400--Sobic004G107600 Sobic003G115800 Sobic003G115800 Sobic001G335400--Sobic003G115800 Sobic001G335400--Sobic005G092800 Sobic003G344600 Sobic003G344600 Sobic001G335400--Sobic003G344600 Sobic009G111600 Sobic009G111600 Sobic001G403700--Sobic009G111600 Sobic004G284500 Sobic004G284500 Sobic001G403700--Sobic004G284500 Sobic002G078400 Sobic002G078400 Sobic001G403700--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic001G403700--Sobic006G182100 Sobic001G403700--Sobic002G296300 Sobic001G403700--Sobic003G248600 Sobic001G403700--Sobic008G132800 Sobic002G214900 Sobic002G214900 Sobic001G403700--Sobic002G214900 Sobic010G213400 Sobic010G213400 Sobic001G403700--Sobic010G213400 Sobic010G029400 Sobic010G029400 Sobic008G132800--Sobic010G029400 Sobic008G132800--Sobic002G078400 Sobic008G132800--Sobic009G016201 Sobic008G132800--Sobic001G331900 Sobic004G066800 Sobic004G066800 Sobic008G132800--Sobic004G066800 Sobic001G105100 Sobic001G105100 Sobic008G132800--Sobic001G105100 Sobic005G157200 Sobic005G157200 Sobic008G132800--Sobic005G157200 Sobic010G065400 Sobic010G065400 Sobic008G132800--Sobic010G065400 Sobic003G217100 Sobic003G217100 Sobic008G132800--Sobic003G217100
Octagon: transcription factors


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