Gene annotation
Transcriptome id Sobic.005G013600.4,Sobic.005G013600.5,Sobic.005G013600.6,Sobic.005G013600.2,Sobic.005G013600.3
Synonym AtWRKY41, WRKY41, Sb05g001175
Functional annotation WRKY46, expressed
UniProt A0A1Z5RGK4 , A0A1Z5RG97
Pfam PF03106
Panther DB PTHR31282 PTHR31282:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G11070 : WRKY family transcription factor,WRKY DNA-binding protein 55
RAP-DB (Rice) LOC_Os11g02480.2,LOC_Os11g02480.1 : WRKY46, expressed
MaizeGDB (Corn) Zm00025a033311
Brachypodium KQJ89441 , KQJ89443 , KQJ89442 , PNT64188
Barley HORVU4Hr1G022970.7 , HORVU4Hr1G022970.4 , HORVU4Hr1G022970.5 , HORVU4Hr1G022970.2 , HORVU4Hr1G022970.3 , HORVU4Hr1G022970.8
Wheat TraesCS4B02G121500 , TraesCS4D02G119700 , TraesCS4A02G193600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G217700 - -
2 Sobic.001G449600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@non-symbiotic hemoglobin 2, putative, expressed -
3 Sobic.009G139700 - -
4 Sobic.007G005700 expressed protein -
5 Sobic.003G255200 expressed protein -
6 Sobic.007G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS8-14 - C2H2 zinc finger protein, expressed -
7 Sobic.003G364000 glycosyl hydrolase, putative, expressed K01183: chitinase
8 Sobic.005G005600 prenylated rab acceptor, putative, expressed -
9 Sobic.003G202000 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
10 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
11 Sobic.004G107700 expressed protein -
12 Sobic.003G255500 expressed protein -
13 Sobic.001G503100 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
14 Sobic.002G034800 - -
15 Sobic.002G235500 bZIP transcription factor domain containing protein, expressed -
16 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
17 Sobic.003G352300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
18 Sobic.003G319700 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
19 Sobic.010G113600 vignain precursor, putative, expressed -
20 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase


Gene co-expression network
sample Sobic005G013600 Sobic005G013600 Sobic009G217700 Sobic009G217700 Sobic005G013600--Sobic009G217700 Sobic001G449600 Sobic001G449600 Sobic005G013600--Sobic001G449600 Sobic009G139700 Sobic009G139700 Sobic005G013600--Sobic009G139700 Sobic007G005700 Sobic007G005700 Sobic005G013600--Sobic007G005700 Sobic003G255200 Sobic003G255200 Sobic005G013600--Sobic003G255200 Sobic007G166000 Sobic007G166000 Sobic005G013600--Sobic007G166000 Sobic003G364000 Sobic003G364000 Sobic005G013600--Sobic003G364000 Sobic005G005600 Sobic005G005600 Sobic005G013600--Sobic005G005600 Sobic003G202000 Sobic003G202000 Sobic005G013600--Sobic003G202000 Sobic009G217700--Sobic001G449600 Sobic009G217700--Sobic003G364000 Sobic003G319700 Sobic003G319700 Sobic009G217700--Sobic003G319700 Sobic009G217700--Sobic003G255200 Sobic009G217700--Sobic009G139700 Sobic004G107700 Sobic004G107700 Sobic009G217700--Sobic004G107700 Sobic009G217700--Sobic005G005600 Sobic002G034800 Sobic002G034800 Sobic009G217700--Sobic002G034800 Sobic009G217700--Sobic005G013600 Sobic001G449600--Sobic009G217700 Sobic001G449600--Sobic003G255200 Sobic001G449600--Sobic005G005600 Sobic001G449600--Sobic003G319700 Sobic001G449600--Sobic007G166000 Sobic002G125700 Sobic002G125700 Sobic001G449600--Sobic002G125700 Sobic001G449600--Sobic002G034800 Sobic003G255500 Sobic003G255500 Sobic001G449600--Sobic003G255500 Sobic009G016300 Sobic009G016300 Sobic001G449600--Sobic009G016300 Sobic009G139700--Sobic009G217700 Sobic009G139700--Sobic003G364000 Sobic009G139700--Sobic005G013600 Sobic005G203100 Sobic005G203100 Sobic009G139700--Sobic005G203100 Sobic009G139700--Sobic001G449600 Sobic009G139700--Sobic007G166000 Sobic009G139700--Sobic007G005700 Sobic010G113600 Sobic010G113600 Sobic009G139700--Sobic010G113600 Sobic003G088500 Sobic003G088500 Sobic009G139700--Sobic003G088500 Sobic005G063300 Sobic005G063300 Sobic007G005700--Sobic005G063300 Sobic007G005700--Sobic009G139700 Sobic007G005700--Sobic002G125700 Sobic007G005700--Sobic001G449600 Sobic007G005700--Sobic009G217700 Sobic007G005700--Sobic003G255200 Sobic007G005700--Sobic007G166000 Sobic007G005700--Sobic005G013600 Sobic003G155600 Sobic003G155600 Sobic007G005700--Sobic003G155600 Sobic003G255200--Sobic004G107700 Sobic003G255200--Sobic002G125700 Sobic008G172600 Sobic008G172600 Sobic003G255200--Sobic008G172600 Sobic004G046200 Sobic004G046200 Sobic003G255200--Sobic004G046200 Sobic010G259600 Sobic010G259600 Sobic003G255200--Sobic010G259600 Sobic003G255200--Sobic001G449600 Sobic007G087200 Sobic007G087200 Sobic003G255200--Sobic007G087200 Sobic001G503100 Sobic001G503100 Sobic003G255200--Sobic001G503100 Sobic003G255200--Sobic002G034800 Sobic007G166000--Sobic001G449600 Sobic009G164600 Sobic009G164600 Sobic007G166000--Sobic009G164600 Sobic007G166000--Sobic005G005600 Sobic007G166000--Sobic009G139700 Sobic007G166000--Sobic010G259600 Sobic006G143400 Sobic006G143400 Sobic007G166000--Sobic006G143400 Sobic007G166000--Sobic009G217700 Sobic009G231000 Sobic009G231000 Sobic007G166000--Sobic009G231000 Sobic007G166000--Sobic007G005700 Sobic010G088700 Sobic010G088700 Sobic003G364000--Sobic010G088700 Sobic003G364000--Sobic009G217700 Sobic010G156500 Sobic010G156500 Sobic003G364000--Sobic010G156500 Sobic003G364300 Sobic003G364300 Sobic003G364000--Sobic003G364300 Sobic003G280200 Sobic003G280200 Sobic003G364000--Sobic003G280200 Sobic010G259500 Sobic010G259500 Sobic003G364000--Sobic010G259500 Sobic005G213500 Sobic005G213500 Sobic003G364000--Sobic005G213500 Sobic003G364000--Sobic002G034800 Sobic003G382600 Sobic003G382600 Sobic003G364000--Sobic003G382600 Sobic005G005600--Sobic003G319700 Sobic005G005600--Sobic001G449600 Sobic005G005600--Sobic006G143400 Sobic005G005600--Sobic009G217700 Sobic005G005600--Sobic005G213500 Sobic005G005600--Sobic007G166000 Sobic005G005600--Sobic003G364000 Sobic001G433900 Sobic001G433900 Sobic005G005600--Sobic001G433900 Sobic005G005600--Sobic009G139700 Sobic003G202000--Sobic009G217700 Sobic003G202000--Sobic001G449600 Sobic003G202000--Sobic002G034800 Sobic003G202000--Sobic005G013600 Sobic003G202000--Sobic003G255200 Sobic003G202000--Sobic003G319700 Sobic003G202000--Sobic004G107700 Sobic003G202000--Sobic003G364000 Sobic003G202000--Sobic003G255500
Octagon: transcription factors


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