Gene annotation
Transcriptome id Sobic.010G113600.1
Synonym Sb10g009840, SAG12
Functional annotation vignain precursor, putative, expressed
UniProt C5Z8G9
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF348
NCBI CDD KOG1543; Cysteine proteinase Cathepsin L
KEGG Orthology -
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G45890 : senescence-associated gene 12
RAP-DB (Rice) LOC_Os04g13090.1 : vignain precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT65238
Barley HORVU4Hr1G006280.3 , HORVU4Hr1G006280.1 , HORVU4Hr1G006280.2 , HORVU2Hr1G023960.1 , HORVU1Hr1G060040.5 , HORVU1Hr1G060040.6 , HORVU1Hr1G060040.1 , HORVU1Hr1G060040.3 , HORVU1Hr1G060040.2
Wheat TraesCS4B02G039600 , TraesCS4A02G274100 , TraesCS4B02G039500 , TraesCS4A02G274000 , TraesCS4D02G036900 , TraesCS4D02G036600 , TraesCS4D02G037100 , TraesCS4D02G037200 , TraesCS4D02G036700 , TraesCS4D02G037500 , TraesCS4A02G273800 , TraesCS4D02G037300 , TraesCS4D02G037000 , TraesCS5B02G523100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G065900 Cupin domain containing protein, expressed -
2 Sobic.009G217700 - -
3 Sobic.003G271500 expressed protein -
4 Sobic.009G139700 - -
5 Sobic.003G364000 glycosyl hydrolase, putative, expressed K01183: chitinase
6 Sobic.008G157800 BURP domain containing protein, expressed -
7 Sobic.005G005600 prenylated rab acceptor, putative, expressed -
8 Sobic.003G319700 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
9 Sobic.010G088700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
10 Sobic.004G023500 GATA zinc finger domain containing protein, expressed -
11 Sobic.001G449600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@non-symbiotic hemoglobin 2, putative, expressed -
12 Sobic.005G013600 WRKY46, expressed -
13 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
14 Sobic.008G170100 phospholipase, putative, expressed -
15 Sobic.005G203100 tropinone reductase 2, putative, expressed K08081: tropinone reductase I
16 Sobic.002G310500 chalcone synthase, putative, expressed -
17 Sobic.004G292001 - -
18 Sobic.001G091600 expressed protein -
19 Sobic.009G141000 KH domain containing protein, putative, expressed K14945: protein quaking
20 Sobic.003G155600 exo70 exocyst complex subunit family protein, putative, expressed -


Gene co-expression network
sample Sobic010G113600 Sobic010G113600 Sobic007G065900 Sobic007G065900 Sobic010G113600--Sobic007G065900 Sobic009G217700 Sobic009G217700 Sobic010G113600--Sobic009G217700 Sobic003G271500 Sobic003G271500 Sobic010G113600--Sobic003G271500 Sobic009G139700 Sobic009G139700 Sobic010G113600--Sobic009G139700 Sobic003G364000 Sobic003G364000 Sobic010G113600--Sobic003G364000 Sobic008G157800 Sobic008G157800 Sobic010G113600--Sobic008G157800 Sobic005G005600 Sobic005G005600 Sobic010G113600--Sobic005G005600 Sobic003G319700 Sobic003G319700 Sobic010G113600--Sobic003G319700 Sobic010G088700 Sobic010G088700 Sobic010G113600--Sobic010G088700 Sobic007G065900--Sobic008G157800 Sobic004G023500 Sobic004G023500 Sobic007G065900--Sobic004G023500 Sobic007G065900--Sobic010G113600 Sobic004G061701 Sobic004G061701 Sobic007G065900--Sobic004G061701 Sobic004G292001 Sobic004G292001 Sobic007G065900--Sobic004G292001 Sobic008G170100 Sobic008G170100 Sobic007G065900--Sobic008G170100 Sobic003G112300 Sobic003G112300 Sobic007G065900--Sobic003G112300 Sobic008G039501 Sobic008G039501 Sobic007G065900--Sobic008G039501 Sobic007G065800 Sobic007G065800 Sobic007G065900--Sobic007G065800 Sobic001G449600 Sobic001G449600 Sobic009G217700--Sobic001G449600 Sobic009G217700--Sobic003G364000 Sobic009G217700--Sobic003G319700 Sobic003G255200 Sobic003G255200 Sobic009G217700--Sobic003G255200 Sobic009G217700--Sobic009G139700 Sobic004G107700 Sobic004G107700 Sobic009G217700--Sobic004G107700 Sobic009G217700--Sobic005G005600 Sobic002G034800 Sobic002G034800 Sobic009G217700--Sobic002G034800 Sobic005G013600 Sobic005G013600 Sobic009G217700--Sobic005G013600 Sobic003G271500--Sobic009G217700 Sobic003G271500--Sobic010G113600 Sobic010G052700 Sobic010G052700 Sobic003G271500--Sobic010G052700 Sobic003G271500--Sobic003G364000 Sobic003G271500--Sobic009G139700 Sobic003G271500--Sobic004G107700 Sobic003G271500--Sobic003G255200 Sobic003G240600 Sobic003G240600 Sobic003G271500--Sobic003G240600 Sobic003G155600 Sobic003G155600 Sobic003G271500--Sobic003G155600 Sobic009G139700--Sobic009G217700 Sobic009G139700--Sobic003G364000 Sobic009G139700--Sobic005G013600 Sobic005G203100 Sobic005G203100 Sobic009G139700--Sobic005G203100 Sobic009G139700--Sobic001G449600 Sobic007G166000 Sobic007G166000 Sobic009G139700--Sobic007G166000 Sobic007G005700 Sobic007G005700 Sobic009G139700--Sobic007G005700 Sobic009G139700--Sobic010G113600 Sobic003G088500 Sobic003G088500 Sobic009G139700--Sobic003G088500 Sobic003G364000--Sobic010G088700 Sobic003G364000--Sobic009G217700 Sobic010G156500 Sobic010G156500 Sobic003G364000--Sobic010G156500 Sobic003G364300 Sobic003G364300 Sobic003G364000--Sobic003G364300 Sobic003G280200 Sobic003G280200 Sobic003G364000--Sobic003G280200 Sobic010G259500 Sobic010G259500 Sobic003G364000--Sobic010G259500 Sobic005G213500 Sobic005G213500 Sobic003G364000--Sobic005G213500 Sobic003G364000--Sobic002G034800 Sobic003G382600 Sobic003G382600 Sobic003G364000--Sobic003G382600 Sobic008G157800--Sobic004G061701 Sobic008G157800--Sobic007G065900 Sobic008G157800--Sobic004G023500 Sobic008G157800--Sobic008G039501 Sobic003G344050 Sobic003G344050 Sobic008G157800--Sobic003G344050 Sobic002G150100 Sobic002G150100 Sobic008G157800--Sobic002G150100 Sobic007G108200 Sobic007G108200 Sobic008G157800--Sobic007G108200 Sobic005G005600--Sobic003G319700 Sobic005G005600--Sobic001G449600 Sobic006G143400 Sobic006G143400 Sobic005G005600--Sobic006G143400 Sobic005G005600--Sobic009G217700 Sobic005G005600--Sobic005G213500 Sobic005G005600--Sobic007G166000 Sobic005G005600--Sobic003G364000 Sobic001G433900 Sobic001G433900 Sobic005G005600--Sobic001G433900 Sobic005G005600--Sobic009G139700 Sobic003G319700--Sobic009G217700 Sobic003G319700--Sobic005G005600 Sobic003G319700--Sobic001G449600 Sobic003G319700--Sobic001G433900 Sobic003G319700--Sobic003G364000 Sobic003G319700--Sobic010G088700 Sobic003G319700--Sobic002G034800 Sobic007G057000 Sobic007G057000 Sobic003G319700--Sobic007G057000 Sobic002G057900 Sobic002G057900 Sobic003G319700--Sobic002G057900 Sobic010G088700--Sobic003G364000 Sobic010G088700--Sobic010G259500 Sobic010G088700--Sobic002G034800 Sobic010G088700--Sobic009G217700 Sobic001G365100 Sobic001G365100 Sobic010G088700--Sobic001G365100 Sobic010G088700--Sobic001G433900 Sobic010G088700--Sobic003G319700 Sobic010G066700 Sobic010G066700 Sobic010G088700--Sobic010G066700 Sobic010G088700--Sobic005G213500
Octagon: transcription factors


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