Gene annotation
Transcriptome id Sobic.009G141000.1,Sobic.009G141000.2
Synonym Sb09g020640
Functional annotation KH domain containing protein, putative, expressed
UniProt C5YY56 , A0A1B6P8Q6
Pfam PF16544
Panther DB PTHR11208 PTHR11208:SF60
NCBI CDD KOG1588; RNA-binding protein Sam68 and related KH domain proteins
KEGG Orthology K14945; protein quaking
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09660 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os01g66300.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU1Hr1G064200.9 , HORVU1Hr1G064200.8 , HORVU1Hr1G064200.7 , HORVU1Hr1G064200.6 , HORVU1Hr1G064200.5 , HORVU1Hr1G064200.3 , HORVU1Hr1G064200.2 , HORVU1Hr1G064200.1 , HORVU1Hr1G064200.12 , HORVU1Hr1G064200.11 , HORVU1Hr1G064200.10
Wheat TraesCS1A02G262600 , TraesCS3A02G404200 , TraesCS1D02G262600 , TraesCS1D02G262600 , TraesCS3D02G399400 , TraesCS3B02G437700 , TraesCS1B02G273200 , TraesCS1B02G273200
Populus PNT42670 , PNT42669


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G088700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
2 Sobic.003G301600 heavy metal-associated domain containing protein, expressed -
3 Sobic.005G051500 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.003G156200 cytochrome P450, putative, expressed -
5 Sobic.003G112300 expressed protein -
6 Sobic.003G364000 glycosyl hydrolase, putative, expressed K01183: chitinase
7 Sobic.005G033900 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
8 Sobic.010G259500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
9 Sobic.005G071100 PCNA - Putative DNA replicative polymerase clamp, expressed K04802: proliferating cell nuclear antigen
10 Sobic.005G224000 stripe rust resistance protein Yr10, putative, expressed K13457: RPM1, disease resistance protein RPM1
11 Sobic.009G153100 zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
12 Sobic.001G433900 PLA IIIA/PLP7, putative, expressed -
13 Sobic.010G113600 vignain precursor, putative, expressed -
14 Sobic.003G417700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
15 Sobic.003G176350 - -
16 Sobic.004G278400 DUF581 domain containing protein, expressed -
17 Sobic.002G203700 hypothetical protein -
18 Sobic.009G217700 - -
19 Sobic.004G313100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
20 Sobic.007G065900 Cupin domain containing protein, expressed -


Gene co-expression network
sample Sobic009G141000 Sobic009G141000 Sobic010G088700 Sobic010G088700 Sobic009G141000--Sobic010G088700 Sobic003G301600 Sobic003G301600 Sobic009G141000--Sobic003G301600 Sobic005G051500 Sobic005G051500 Sobic009G141000--Sobic005G051500 Sobic003G156200 Sobic003G156200 Sobic009G141000--Sobic003G156200 Sobic003G112300 Sobic003G112300 Sobic009G141000--Sobic003G112300 Sobic003G364000 Sobic003G364000 Sobic009G141000--Sobic003G364000 Sobic005G033900 Sobic005G033900 Sobic009G141000--Sobic005G033900 Sobic010G259500 Sobic010G259500 Sobic009G141000--Sobic010G259500 Sobic005G071100 Sobic005G071100 Sobic009G141000--Sobic005G071100 Sobic010G088700--Sobic003G364000 Sobic010G088700--Sobic010G259500 Sobic002G034800 Sobic002G034800 Sobic010G088700--Sobic002G034800 Sobic009G217700 Sobic009G217700 Sobic010G088700--Sobic009G217700 Sobic001G365100 Sobic001G365100 Sobic010G088700--Sobic001G365100 Sobic001G433900 Sobic001G433900 Sobic010G088700--Sobic001G433900 Sobic003G319700 Sobic003G319700 Sobic010G088700--Sobic003G319700 Sobic010G066700 Sobic010G066700 Sobic010G088700--Sobic010G066700 Sobic005G213500 Sobic005G213500 Sobic010G088700--Sobic005G213500 Sobic002G203700 Sobic002G203700 Sobic003G301600--Sobic002G203700 Sobic003G301600--Sobic003G156200 Sobic003G301600--Sobic010G259500 Sobic003G417700 Sobic003G417700 Sobic003G301600--Sobic003G417700 Sobic003G301600--Sobic005G033900 Sobic003G301600--Sobic003G364000 Sobic003G301600--Sobic001G433900 Sobic010G156500 Sobic010G156500 Sobic003G301600--Sobic010G156500 Sobic003G301600--Sobic010G088700 Sobic005G011200 Sobic005G011200 Sobic005G051500--Sobic005G011200 Sobic003G307801 Sobic003G307801 Sobic005G051500--Sobic003G307801 Sobic005G051500--Sobic010G259500 Sobic006G268800 Sobic006G268800 Sobic005G051500--Sobic006G268800 Sobic001G187200 Sobic001G187200 Sobic005G051500--Sobic001G187200 Sobic009G145500 Sobic009G145500 Sobic005G051500--Sobic009G145500 Sobic002G368500 Sobic002G368500 Sobic005G051500--Sobic002G368500 Sobic005G051500--Sobic003G417700 Sobic005G051500--Sobic005G033900 Sobic003G156200--Sobic002G203700 Sobic003G156200--Sobic003G417700 Sobic004G313100 Sobic004G313100 Sobic003G156200--Sobic004G313100 Sobic003G280200 Sobic003G280200 Sobic003G156200--Sobic003G280200 Sobic002G415100 Sobic002G415100 Sobic003G156200--Sobic002G415100 Sobic003G156200--Sobic003G301600 Sobic010G213700 Sobic010G213700 Sobic003G156200--Sobic010G213700 Sobic005G029200 Sobic005G029200 Sobic003G156200--Sobic005G029200 Sobic004G148200 Sobic004G148200 Sobic003G156200--Sobic004G148200 Sobic007G065900 Sobic007G065900 Sobic003G112300--Sobic007G065900 Sobic008G170100 Sobic008G170100 Sobic003G112300--Sobic008G170100 Sobic008G157800 Sobic008G157800 Sobic003G112300--Sobic008G157800 Sobic010G229075 Sobic010G229075 Sobic003G112300--Sobic010G229075 Sobic003G112300--Sobic009G141000 Sobic009G139700 Sobic009G139700 Sobic003G112300--Sobic009G139700 Sobic004G023500 Sobic004G023500 Sobic003G112300--Sobic004G023500 Sobic004G292001 Sobic004G292001 Sobic003G112300--Sobic004G292001 Sobic010G085500 Sobic010G085500 Sobic003G112300--Sobic010G085500 Sobic003G364000--Sobic010G088700 Sobic003G364000--Sobic009G217700 Sobic003G364000--Sobic010G156500 Sobic003G364300 Sobic003G364300 Sobic003G364000--Sobic003G364300 Sobic003G364000--Sobic003G280200 Sobic003G364000--Sobic010G259500 Sobic003G364000--Sobic005G213500 Sobic003G364000--Sobic002G034800 Sobic003G382600 Sobic003G382600 Sobic003G364000--Sobic003G382600 Sobic010G211900 Sobic010G211900 Sobic005G033900--Sobic010G211900 Sobic003G176350 Sobic003G176350 Sobic005G033900--Sobic003G176350 Sobic005G033900--Sobic005G051500 Sobic005G033900--Sobic003G301600 Sobic005G033900--Sobic006G268800 Sobic005G033900--Sobic010G259500 Sobic001G402200 Sobic001G402200 Sobic005G033900--Sobic001G402200 Sobic010G084300 Sobic010G084300 Sobic005G033900--Sobic010G084300 Sobic003G200700 Sobic003G200700 Sobic005G033900--Sobic003G200700 Sobic010G259500--Sobic001G365100 Sobic010G259500--Sobic001G402200 Sobic007G039600 Sobic007G039600 Sobic010G259500--Sobic007G039600 Sobic010G259500--Sobic003G364000 Sobic007G155100 Sobic007G155100 Sobic010G259500--Sobic007G155100 Sobic010G259500--Sobic003G307801 Sobic010G259500--Sobic010G066700 Sobic010G259500--Sobic010G088700 Sobic010G259500--Sobic005G051500 Sobic005G224000 Sobic005G224000 Sobic005G071100--Sobic005G224000 Sobic005G071100--Sobic003G301600 Sobic001G401000 Sobic001G401000 Sobic005G071100--Sobic001G401000 Sobic005G071100--Sobic009G141000 Sobic001G195300 Sobic001G195300 Sobic005G071100--Sobic001G195300 Sobic005G071100--Sobic003G156200 Sobic005G110451 Sobic005G110451 Sobic005G071100--Sobic005G110451 Sobic005G110454 Sobic005G110454 Sobic005G071100--Sobic005G110454 Sobic008G164201 Sobic008G164201 Sobic005G071100--Sobic008G164201
Octagon: transcription factors


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