Gene annotation
Transcriptome id Sobic.005G071100.1,Sobic.005G071100.4,Sobic.005G071100.2,Sobic.005G071100.3
Synonym ATPCNA1, PCNA1, Sb05g005863
Functional annotation PCNA - Putative DNA replicative polymerase clamp, expressed
UniProt A0A1B6PQN5 , A0A1B6PQN7
Pfam PF02747
Panther DB PTHR11352 PTHR11352:SF4
NCBI CDD -
KEGG Orthology K04802; proliferating cell nuclear antigen
Gene Ontology GO:0006275; regulation of DNA replication GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G07370 : proliferating cell nuclear antigen 2,proliferating cellular nuclear antigen 1
RAP-DB (Rice) LOC_Os02g56130.1 : PCNA - Putative DNA replicative polymerase clamp, expressed
MaizeGDB (Corn) -
Brachypodium KQJ92713 , PNT65345 , PNT65341 , PNT65342 , PNT65643
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G224000 stripe rust resistance protein Yr10, putative, expressed K13457: RPM1, disease resistance protein RPM1
2 Sobic.003G301600 heavy metal-associated domain containing protein, expressed -
3 Sobic.001G401000 pathogenesis-related Bet v I family protein, putative, expressed -
4 Sobic.009G141000 KH domain containing protein, putative, expressed K14945: protein quaking
5 Sobic.001G195300 cytochrome P450, putative, expressed -
6 Sobic.003G156200 cytochrome P450, putative, expressed -
7 Sobic.005G110451 - -
8 Sobic.005G110454 - -
9 Sobic.008G164201 - -
10 Sobic.010G102200 expressed protein -
11 Sobic.002G203700 hypothetical protein -
12 Sobic.003G417700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
13 Sobic.005G033900 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
14 Sobic.001G400900 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pathogenesis-related Bet v I family protein, putative, expressed -
15 Sobic.004G180301 - -
16 Sobic.004G304300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K15095: (+)-neomenthol dehydrogenase
17 Sobic.003G426000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.004G313100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
19 Sobic.003G073460 - -
20 Sobic.010G102100 expressed protein -


Gene co-expression network
sample Sobic005G071100 Sobic005G071100 Sobic005G224000 Sobic005G224000 Sobic005G071100--Sobic005G224000 Sobic003G301600 Sobic003G301600 Sobic005G071100--Sobic003G301600 Sobic001G401000 Sobic001G401000 Sobic005G071100--Sobic001G401000 Sobic009G141000 Sobic009G141000 Sobic005G071100--Sobic009G141000 Sobic001G195300 Sobic001G195300 Sobic005G071100--Sobic001G195300 Sobic003G156200 Sobic003G156200 Sobic005G071100--Sobic003G156200 Sobic005G110451 Sobic005G110451 Sobic005G071100--Sobic005G110451 Sobic005G110454 Sobic005G110454 Sobic005G071100--Sobic005G110454 Sobic008G164201 Sobic008G164201 Sobic005G071100--Sobic008G164201 Sobic005G224000--Sobic001G401000 Sobic005G224000--Sobic005G110454 Sobic005G224000--Sobic005G110451 Sobic003G417700 Sobic003G417700 Sobic005G224000--Sobic003G417700 Sobic005G224000--Sobic001G195300 Sobic008G158100 Sobic008G158100 Sobic005G224000--Sobic008G158100 Sobic005G224000--Sobic005G071100 Sobic010G211600 Sobic010G211600 Sobic005G224000--Sobic010G211600 Sobic005G224000--Sobic003G156200 Sobic002G203700 Sobic002G203700 Sobic003G301600--Sobic002G203700 Sobic003G301600--Sobic003G156200 Sobic010G259500 Sobic010G259500 Sobic003G301600--Sobic010G259500 Sobic003G301600--Sobic003G417700 Sobic005G033900 Sobic005G033900 Sobic003G301600--Sobic005G033900 Sobic003G364000 Sobic003G364000 Sobic003G301600--Sobic003G364000 Sobic001G433900 Sobic001G433900 Sobic003G301600--Sobic001G433900 Sobic010G156500 Sobic010G156500 Sobic003G301600--Sobic010G156500 Sobic010G088700 Sobic010G088700 Sobic003G301600--Sobic010G088700 Sobic001G401000--Sobic005G224000 Sobic001G401000--Sobic005G110454 Sobic001G401000--Sobic005G110451 Sobic001G401000--Sobic001G195300 Sobic001G401000--Sobic008G164201 Sobic001G400900 Sobic001G400900 Sobic001G401000--Sobic001G400900 Sobic001G401000--Sobic005G071100 Sobic001G401000--Sobic003G417700 Sobic001G401000--Sobic003G156200 Sobic009G141000--Sobic010G088700 Sobic009G141000--Sobic003G301600 Sobic005G051500 Sobic005G051500 Sobic009G141000--Sobic005G051500 Sobic009G141000--Sobic003G156200 Sobic003G112300 Sobic003G112300 Sobic009G141000--Sobic003G112300 Sobic009G141000--Sobic003G364000 Sobic009G141000--Sobic005G033900 Sobic009G141000--Sobic010G259500 Sobic009G141000--Sobic005G071100 Sobic001G195300--Sobic005G110454 Sobic001G195300--Sobic005G110451 Sobic001G195300--Sobic001G401000 Sobic001G195300--Sobic005G224000 Sobic001G195300--Sobic005G071100 Sobic009G144800 Sobic009G144800 Sobic001G195300--Sobic009G144800 Sobic001G195300--Sobic008G158100 Sobic002G010900 Sobic002G010900 Sobic001G195300--Sobic002G010900 Sobic001G195300--Sobic003G417700 Sobic003G156200--Sobic002G203700 Sobic003G156200--Sobic003G417700 Sobic004G313100 Sobic004G313100 Sobic003G156200--Sobic004G313100 Sobic003G280200 Sobic003G280200 Sobic003G156200--Sobic003G280200 Sobic002G415100 Sobic002G415100 Sobic003G156200--Sobic002G415100 Sobic003G156200--Sobic003G301600 Sobic010G213700 Sobic010G213700 Sobic003G156200--Sobic010G213700 Sobic005G029200 Sobic005G029200 Sobic003G156200--Sobic005G029200 Sobic004G148200 Sobic004G148200 Sobic003G156200--Sobic004G148200 Sobic005G110451--Sobic005G110454 Sobic005G110451--Sobic001G195300 Sobic005G110451--Sobic002G010900 Sobic005G110451--Sobic001G401000 Sobic001G114900 Sobic001G114900 Sobic005G110451--Sobic001G114900 Sobic005G110451--Sobic005G224000 Sobic005G110451--Sobic010G211600 Sobic005G110451--Sobic009G144800 Sobic008G158332 Sobic008G158332 Sobic005G110451--Sobic008G158332 Sobic005G110454--Sobic005G110451 Sobic005G110454--Sobic001G195300 Sobic005G110454--Sobic002G010900 Sobic005G110454--Sobic001G401000 Sobic005G110454--Sobic001G114900 Sobic005G110454--Sobic005G224000 Sobic005G110454--Sobic009G144800 Sobic005G110454--Sobic010G211600 Sobic005G110454--Sobic008G158332 Sobic010G102200 Sobic010G102200 Sobic008G164201--Sobic010G102200 Sobic008G164201--Sobic001G401000 Sobic008G164201--Sobic005G033900 Sobic003G426000 Sobic003G426000 Sobic008G164201--Sobic003G426000 Sobic008G164201--Sobic003G417700 Sobic003G200700 Sobic003G200700 Sobic008G164201--Sobic003G200700 Sobic008G164201--Sobic005G224000 Sobic010G042500 Sobic010G042500 Sobic008G164201--Sobic010G042500 Sobic008G164201--Sobic003G156200
Octagon: transcription factors


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