Gene annotation
Transcriptome id Sobic.009G153100.1
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6P965
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF180
NCBI CDD -
KEGG Orthology K19040; E3 ubiquitin-protein ligase ATL10/75/76/77/78
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G10910 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g36310.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021566 , Zm00025a039571 , Zm00025a032356 , Zm00025a047942 , Zm00025a035082
Brachypodium KQJ91398
Barley HORVU1Hr1G074230.1 , HORVU2Hr1G104860.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G415100 POEI50 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
2 Sobic.003G156200 cytochrome P450, putative, expressed -
3 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.010G239300 oryzain beta chain precursor, putative, expressed -
5 Sobic.005G029200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
6 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
7 Sobic.009G128700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
8 Sobic.003G417700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
9 Sobic.002G034800 - -
10 Sobic.010G088700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
11 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.001G070800 expressed protein -
13 Sobic.003G252800 hypothetical protein -
14 Sobic.001G063000 gibberellin receptor GID1L2, putative, expressed -
15 Sobic.003G364000 glycosyl hydrolase, putative, expressed K01183: chitinase
16 Sobic.010G102100 expressed protein -
17 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
18 Sobic.009G139400 expressed protein -
19 Sobic.010G213700 GDU1, putative, expressed -
20 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G153100 Sobic009G153100 Sobic002G415100 Sobic002G415100 Sobic009G153100--Sobic002G415100 Sobic003G156200 Sobic003G156200 Sobic009G153100--Sobic003G156200 Sobic003G280200 Sobic003G280200 Sobic009G153100--Sobic003G280200 Sobic010G239300 Sobic010G239300 Sobic009G153100--Sobic010G239300 Sobic005G029200 Sobic005G029200 Sobic009G153100--Sobic005G029200 Sobic003G297600 Sobic003G297600 Sobic009G153100--Sobic003G297600 Sobic009G128700 Sobic009G128700 Sobic009G153100--Sobic009G128700 Sobic003G417700 Sobic003G417700 Sobic009G153100--Sobic003G417700 Sobic002G034800 Sobic002G034800 Sobic009G153100--Sobic002G034800 Sobic002G415100--Sobic010G239300 Sobic002G415100--Sobic003G280200 Sobic002G415100--Sobic009G128700 Sobic001G317200 Sobic001G317200 Sobic002G415100--Sobic001G317200 Sobic002G415100--Sobic003G297600 Sobic010G213700 Sobic010G213700 Sobic002G415100--Sobic010G213700 Sobic002G415100--Sobic002G034800 Sobic009G231000 Sobic009G231000 Sobic002G415100--Sobic009G231000 Sobic002G415100--Sobic003G156200 Sobic002G203700 Sobic002G203700 Sobic003G156200--Sobic002G203700 Sobic003G156200--Sobic003G417700 Sobic004G313100 Sobic004G313100 Sobic003G156200--Sobic004G313100 Sobic003G156200--Sobic003G280200 Sobic003G156200--Sobic002G415100 Sobic003G301600 Sobic003G301600 Sobic003G156200--Sobic003G301600 Sobic003G156200--Sobic010G213700 Sobic003G156200--Sobic005G029200 Sobic004G148200 Sobic004G148200 Sobic003G156200--Sobic004G148200 Sobic003G280200--Sobic003G417700 Sobic003G280200--Sobic002G415100 Sobic009G139400 Sobic009G139400 Sobic003G280200--Sobic009G139400 Sobic003G280200--Sobic003G297600 Sobic009G077800 Sobic009G077800 Sobic003G280200--Sobic009G077800 Sobic003G280200--Sobic005G029200 Sobic003G364000 Sobic003G364000 Sobic003G280200--Sobic003G364000 Sobic002G004900 Sobic002G004900 Sobic003G280200--Sobic002G004900 Sobic003G280200--Sobic002G034800 Sobic010G239300--Sobic002G415100 Sobic010G239300--Sobic001G317200 Sobic010G239300--Sobic009G128700 Sobic010G084400 Sobic010G084400 Sobic010G239300--Sobic010G084400 Sobic002G416600 Sobic002G416600 Sobic010G239300--Sobic002G416600 Sobic003G087300 Sobic003G087300 Sobic010G239300--Sobic003G087300 Sobic007G145600 Sobic007G145600 Sobic010G239300--Sobic007G145600 Sobic006G099900 Sobic006G099900 Sobic010G239300--Sobic006G099900 Sobic005G101800 Sobic005G101800 Sobic010G239300--Sobic005G101800 Sobic004G189400 Sobic004G189400 Sobic005G029200--Sobic004G189400 Sobic005G029200--Sobic004G148200 Sobic005G029200--Sobic003G297600 Sobic005G029200--Sobic010G213700 Sobic002G055700 Sobic002G055700 Sobic005G029200--Sobic002G055700 Sobic003G303100 Sobic003G303100 Sobic005G029200--Sobic003G303100 Sobic005G029200--Sobic009G077800 Sobic005G029200--Sobic009G139400 Sobic001G423800 Sobic001G423800 Sobic005G029200--Sobic001G423800 Sobic003G297600--Sobic009G077800 Sobic003G297600--Sobic009G139400 Sobic001G070800 Sobic001G070800 Sobic003G297600--Sobic001G070800 Sobic003G297600--Sobic005G029200 Sobic003G297600--Sobic004G189400 Sobic008G050600 Sobic008G050600 Sobic003G297600--Sobic008G050600 Sobic003G297600--Sobic001G317200 Sobic005G091500 Sobic005G091500 Sobic003G297600--Sobic005G091500 Sobic003G297600--Sobic002G055700 Sobic009G128700--Sobic010G084400 Sobic003G252800 Sobic003G252800 Sobic009G128700--Sobic003G252800 Sobic003G426300 Sobic003G426300 Sobic009G128700--Sobic003G426300 Sobic009G128700--Sobic005G101800 Sobic009G128700--Sobic010G239300 Sobic009G128700--Sobic002G415100 Sobic003G426000 Sobic003G426000 Sobic009G128700--Sobic003G426000 Sobic009G128700--Sobic006G099900 Sobic009G128700--Sobic003G280200 Sobic003G417700--Sobic003G280200 Sobic003G417700--Sobic003G156200 Sobic003G417700--Sobic004G148200 Sobic003G417700--Sobic005G029200 Sobic003G417700--Sobic009G128700 Sobic003G280100 Sobic003G280100 Sobic003G417700--Sobic003G280100 Sobic003G417700--Sobic010G213700 Sobic003G417700--Sobic003G426000 Sobic008G158100 Sobic008G158100 Sobic003G417700--Sobic008G158100 Sobic010G066700 Sobic010G066700 Sobic002G034800--Sobic010G066700 Sobic002G034800--Sobic009G139400 Sobic004G107700 Sobic004G107700 Sobic002G034800--Sobic004G107700 Sobic002G034800--Sobic003G280200 Sobic002G034800--Sobic009G077800 Sobic003G255200 Sobic003G255200 Sobic002G034800--Sobic003G255200 Sobic001G119400 Sobic001G119400 Sobic002G034800--Sobic001G119400 Sobic009G183400 Sobic009G183400 Sobic002G034800--Sobic009G183400 Sobic010G259600 Sobic010G259600 Sobic002G034800--Sobic010G259600
Octagon: transcription factors


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