Gene annotation
Transcriptome id Sobic.004G228100.2,Sobic.004G228100.1,Sobic.004G228100.3
Synonym Sb04g027250, RMA3, ATRMA3
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XYA1
Pfam PF00097
Panther DB PTHR12313:SF2 PTHR12313 PTHR12313 PTHR12313:SF2
NCBI CDD KOG0823; Predicted E3 ubiquitin ligase
KEGG Orthology K10666; E3 ubiquitin-protein ligase RNF5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G03510 : RING membrane-anchor 1
RAP-DB (Rice) LOC_Os04g44820.2,LOC_Os04g44820.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS5B02G054600
Populus PNT11893 , PNT11897 , PNT11896 , PNT11895 , PNT11894


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cDNA sequences
Sobic.004G228100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G331500 NHL25, putative, expressed -
2 Sobic.003G013600 expressed protein -
3 Sobic.009G080200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CAPIP1, putative, expressed K14496: abscisic acid receptor PYR/PYL family
4 Sobic.009G181400 expressed protein -
5 Sobic.003G123300 zinc finger, C3HC4 type domain containing protein, expressed K16282: E3 ubiquitin-protein ligase RHA2
6 Sobic.001G011800 SAM domain containing protein, putative, expressed -
7 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
8 Sobic.002G123200 DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed K03009: RPB12, DNA-directed RNA polymerases I, II, and III subunit RPABC4
9 Sobic.007G181600 dehydrogenase, putative, expressed K00008: SORD, L-iditol 2-dehydrogenase
10 Sobic.010G066300 OsRCI2-8 - Putative low temperature and salt responsive protein, expressed -
11 Sobic.001G431800 DUF292 domain containing protein, expressed -
12 Sobic.009G100300 expressed protein -
13 Sobic.010G021100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K12734: peptidyl-prolyl cis-trans isomerase-like 3
14 Sobic.001G510600 expressed protein -
15 Sobic.007G188701 - -
16 Sobic.004G015400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -
17 Sobic.004G325900 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
18 Sobic.010G250600 expressed protein -
19 Sobic.002G117200 B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
20 Sobic.008G012900 calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML


Gene co-expression network
sample Sobic004G228100 Sobic004G228100 Sobic003G331500 Sobic003G331500 Sobic004G228100--Sobic003G331500 Sobic003G013600 Sobic003G013600 Sobic004G228100--Sobic003G013600 Sobic009G080200 Sobic009G080200 Sobic004G228100--Sobic009G080200 Sobic009G181400 Sobic009G181400 Sobic004G228100--Sobic009G181400 Sobic003G123300 Sobic003G123300 Sobic004G228100--Sobic003G123300 Sobic001G011800 Sobic001G011800 Sobic004G228100--Sobic001G011800 Sobic006G167800 Sobic006G167800 Sobic004G228100--Sobic006G167800 Sobic002G123200 Sobic002G123200 Sobic004G228100--Sobic002G123200 Sobic007G181600 Sobic007G181600 Sobic004G228100--Sobic007G181600 Sobic002G269300 Sobic002G269300 Sobic003G331500--Sobic002G269300 Sobic003G331600 Sobic003G331600 Sobic003G331500--Sobic003G331600 Sobic002G269400 Sobic002G269400 Sobic003G331500--Sobic002G269400 Sobic010G179800 Sobic010G179800 Sobic003G331500--Sobic010G179800 Sobic003G331500--Sobic009G181400 Sobic003G331500--Sobic004G228100 Sobic003G331500--Sobic006G167800 Sobic002G376000 Sobic002G376000 Sobic003G331500--Sobic002G376000 Sobic002G328550 Sobic002G328550 Sobic003G331500--Sobic002G328550 Sobic003G013600--Sobic003G123300 Sobic003G013600--Sobic009G080200 Sobic003G085700 Sobic003G085700 Sobic003G013600--Sobic003G085700 Sobic001G225600 Sobic001G225600 Sobic003G013600--Sobic001G225600 Sobic001G530350 Sobic001G530350 Sobic003G013600--Sobic001G530350 Sobic010G267000 Sobic010G267000 Sobic003G013600--Sobic010G267000 Sobic003G296300 Sobic003G296300 Sobic003G013600--Sobic003G296300 Sobic001G293800 Sobic001G293800 Sobic003G013600--Sobic001G293800 Sobic001G225400 Sobic001G225400 Sobic003G013600--Sobic001G225400 Sobic009G080200--Sobic003G013600 Sobic001G285000 Sobic001G285000 Sobic009G080200--Sobic001G285000 Sobic002G117200 Sobic002G117200 Sobic009G080200--Sobic002G117200 Sobic004G275200 Sobic004G275200 Sobic009G080200--Sobic004G275200 Sobic009G080200--Sobic002G123200 Sobic009G156300 Sobic009G156300 Sobic009G080200--Sobic009G156300 Sobic009G080200--Sobic003G123300 Sobic001G078200 Sobic001G078200 Sobic009G080200--Sobic001G078200 Sobic002G194700 Sobic002G194700 Sobic009G080200--Sobic002G194700 Sobic001G088300 Sobic001G088300 Sobic009G181400--Sobic001G088300 Sobic001G510600 Sobic001G510600 Sobic009G181400--Sobic001G510600 Sobic003G102200 Sobic003G102200 Sobic009G181400--Sobic003G102200 Sobic002G405600 Sobic002G405600 Sobic009G181400--Sobic002G405600 Sobic003G202200 Sobic003G202200 Sobic009G181400--Sobic003G202200 Sobic003G110200 Sobic003G110200 Sobic009G181400--Sobic003G110200 Sobic002G092801 Sobic002G092801 Sobic009G181400--Sobic002G092801 Sobic001G295700 Sobic001G295700 Sobic009G181400--Sobic001G295700 Sobic001G204900 Sobic001G204900 Sobic009G181400--Sobic001G204900 Sobic003G123300--Sobic003G013600 Sobic001G465100 Sobic001G465100 Sobic003G123300--Sobic001G465100 Sobic006G051100 Sobic006G051100 Sobic003G123300--Sobic006G051100 Sobic003G123300--Sobic001G225600 Sobic002G421600 Sobic002G421600 Sobic003G123300--Sobic002G421600 Sobic006G241350 Sobic006G241350 Sobic003G123300--Sobic006G241350 Sobic002G367700 Sobic002G367700 Sobic003G123300--Sobic002G367700 Sobic003G123300--Sobic001G530350 Sobic003G123300--Sobic010G267000 Sobic009G127300 Sobic009G127300 Sobic001G011800--Sobic009G127300 Sobic001G011800--Sobic007G181600 Sobic007G050300 Sobic007G050300 Sobic001G011800--Sobic007G050300 Sobic004G298700 Sobic004G298700 Sobic001G011800--Sobic004G298700 Sobic010G079800 Sobic010G079800 Sobic001G011800--Sobic010G079800 Sobic006G094500 Sobic006G094500 Sobic001G011800--Sobic006G094500 Sobic002G400400 Sobic002G400400 Sobic001G011800--Sobic002G400400 Sobic006G276200 Sobic006G276200 Sobic001G011800--Sobic006G276200 Sobic003G436500 Sobic003G436500 Sobic001G011800--Sobic003G436500 Sobic001G526000 Sobic001G526000 Sobic006G167800--Sobic001G526000 Sobic006G167800--Sobic003G296300 Sobic004G110400 Sobic004G110400 Sobic006G167800--Sobic004G110400 Sobic006G167800--Sobic002G376000 Sobic010G157500 Sobic010G157500 Sobic006G167800--Sobic010G157500 Sobic001G093900 Sobic001G093900 Sobic006G167800--Sobic001G093900 Sobic009G067400 Sobic009G067400 Sobic006G167800--Sobic009G067400 Sobic001G195100 Sobic001G195100 Sobic006G167800--Sobic001G195100 Sobic001G144400 Sobic001G144400 Sobic006G167800--Sobic001G144400 Sobic009G199700 Sobic009G199700 Sobic002G123200--Sobic009G199700 Sobic007G079700 Sobic007G079700 Sobic002G123200--Sobic007G079700 Sobic001G136900 Sobic001G136900 Sobic002G123200--Sobic001G136900 Sobic002G204000 Sobic002G204000 Sobic002G123200--Sobic002G204000 Sobic002G123200--Sobic002G117200 Sobic004G186000 Sobic004G186000 Sobic002G123200--Sobic004G186000 Sobic008G128600 Sobic008G128600 Sobic002G123200--Sobic008G128600 Sobic007G126200 Sobic007G126200 Sobic002G123200--Sobic007G126200 Sobic003G250500 Sobic003G250500 Sobic002G123200--Sobic003G250500 Sobic007G181600--Sobic004G298700 Sobic007G090442 Sobic007G090442 Sobic007G181600--Sobic007G090442 Sobic006G180900 Sobic006G180900 Sobic007G181600--Sobic006G180900 Sobic001G310500 Sobic001G310500 Sobic007G181600--Sobic001G310500 Sobic008G013000 Sobic008G013000 Sobic007G181600--Sobic008G013000 Sobic010G095300 Sobic010G095300 Sobic007G181600--Sobic010G095300 Sobic003G111400 Sobic003G111400 Sobic007G181600--Sobic003G111400 Sobic001G037800 Sobic001G037800 Sobic007G181600--Sobic001G037800 Sobic007G181600--Sobic001G011800
Octagon: transcription factors


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