Gene annotation
Transcriptome id Sobic.001G431800.1
Synonym Sb01g040620
Functional annotation DUF292 domain containing protein, expressed
UniProt C5WQT6
Pfam PF03398
Panther DB PTHR12161 PTHR12161:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13340 : Regulator of Vps4 activity in the MVB pathway protein
RAP-DB (Rice) LOC_Os03g15230.1 : DUF292 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001672
Brachypodium KQK22500
Barley HORVU4Hr1G062110.1 , HORVU4Hr1G062110.2 , HORVU4Hr1G062110.3 , HORVU4Hr1G062110.4 , HORVU4Hr1G062110.5 , HORVU4Hr1G062110.6 , HORVU4Hr1G062110.7 , HORVU4Hr1G062110.8 , HORVU4Hr1G062110.9
Wheat TraesCS4A02G085000 , TraesCS4D02G219400 , TraesCS4B02G219200 , TraesCS4D02G219400 , TraesCS4D02G219400 , TraesCS4D02G219400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G153800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein beta-fructofuranosidase (Os)(PubMedID : 27208977)@neutral/alkaline invertase, putative, expressed -
2 Sobic.004G187300 zinc finger protein, putative, expressed -
3 Sobic.010G172200 cytochrome P450, putative, expressed -
4 Sobic.003G264901 - -
5 Sobic.009G205600 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
6 Sobic.004G096300 protein phosphatase 2C, putative, expressed -
7 Sobic.001G293800 chloroplast beta-amylase(PubMedID : 26465154)@chloroplast beta-amylase(PubMedID : 26465154)@beta-amylase, putative, expressed K01177: beta-amylase
8 Sobic.010G137400 cysteine-rich receptor-like protein kinase 10 precursor, putative, expressed -
9 Sobic.003G151800 expressed protein -
10 Sobic.004G275200 zinc-binding protein, putative, expressed -
11 Sobic.006G053700 ACT domain containing protein, expressed -
12 Sobic.002G271600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
13 Sobic.010G210700 NAD dependent epimerase/dehydratase family protein, putative, expressed -
14 Sobic.004G228100 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
15 Sobic.001G445900 "CYP90B2(Ortholog in rice:Wu et al., 2008)"(PubMedID : 31659844)@cytochrome P450, putative, expressed K09587: CYP90B1, steroid 22-alpha-hydroxylase
16 Sobic.005G129000 - -
17 Sobic.008G012900 calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
18 Sobic.004G340700 OsFBX70 - F-box domain containing protein, expressed -
19 Sobic.007G054100 stress-induced protein, putative, expressed -
20 Sobic.005G007700 expressed protein -


Gene co-expression network
sample Sobic001G431800 Sobic001G431800 Sobic003G153800 Sobic003G153800 Sobic001G431800--Sobic003G153800 Sobic004G187300 Sobic004G187300 Sobic001G431800--Sobic004G187300 Sobic010G172200 Sobic010G172200 Sobic001G431800--Sobic010G172200 Sobic003G264901 Sobic003G264901 Sobic001G431800--Sobic003G264901 Sobic009G205600 Sobic009G205600 Sobic001G431800--Sobic009G205600 Sobic004G096300 Sobic004G096300 Sobic001G431800--Sobic004G096300 Sobic001G293800 Sobic001G293800 Sobic001G431800--Sobic001G293800 Sobic010G137400 Sobic010G137400 Sobic001G431800--Sobic010G137400 Sobic003G151800 Sobic003G151800 Sobic001G431800--Sobic003G151800 SobicK020500 SobicK020500 Sobic003G153800--SobicK020500 Sobic003G153800--Sobic004G187300 Sobic003G153800--Sobic004G096300 Sobic003G153800--Sobic001G293800 Sobic003G153800--Sobic009G205600 Sobic003G153800--Sobic003G264901 Sobic007G071000 Sobic007G071000 Sobic003G153800--Sobic007G071000 Sobic001G410450 Sobic001G410450 Sobic003G153800--Sobic001G410450 Sobic006G152500 Sobic006G152500 Sobic003G153800--Sobic006G152500 Sobic004G195800 Sobic004G195800 Sobic004G187300--Sobic004G195800 Sobic004G187300--Sobic003G153800 SobicK044407 SobicK044407 Sobic004G187300--SobicK044407 Sobic004G187300--Sobic001G410450 Sobic001G012000 Sobic001G012000 Sobic004G187300--Sobic001G012000 Sobic008G181801 Sobic008G181801 Sobic004G187300--Sobic008G181801 Sobic004G187300--SobicK020500 Sobic002G209100 Sobic002G209100 Sobic004G187300--Sobic002G209100 Sobic004G187300--Sobic009G205600 Sobic010G172200--Sobic004G096300 Sobic010G172200--Sobic003G264901 Sobic006G053700 Sobic006G053700 Sobic010G172200--Sobic006G053700 Sobic010G172200--Sobic001G293800 Sobic001G377000 Sobic001G377000 Sobic010G172200--Sobic001G377000 Sobic010G172200--Sobic007G071000 Sobic001G225500 Sobic001G225500 Sobic010G172200--Sobic001G225500 Sobic007G014600 Sobic007G014600 Sobic010G172200--Sobic007G014600 Sobic008G152200 Sobic008G152200 Sobic010G172200--Sobic008G152200 Sobic003G264901--Sobic004G096300 Sobic003G264901--Sobic010G172200 Sobic003G264901--Sobic001G293800 Sobic003G264901--Sobic006G053700 Sobic003G264901--Sobic007G071000 Sobic003G264901--Sobic001G377000 Sobic003G264901--Sobic009G205600 Sobic003G264901--Sobic003G153800 Sobic001G053900 Sobic001G053900 Sobic003G264901--Sobic001G053900 Sobic004G217700 Sobic004G217700 Sobic009G205600--Sobic004G217700 Sobic003G402200 Sobic003G402200 Sobic009G205600--Sobic003G402200 Sobic002G271600 Sobic002G271600 Sobic009G205600--Sobic002G271600 Sobic009G205600--Sobic001G410450 Sobic009G205600--Sobic007G014600 Sobic009G205600--Sobic004G195800 Sobic009G205600--Sobic002G209100 Sobic006G060800 Sobic006G060800 Sobic009G205600--Sobic006G060800 Sobic009G205600--Sobic004G187300 Sobic004G096300--Sobic010G172200 Sobic004G096300--Sobic001G293800 Sobic004G096300--Sobic001G377000 Sobic009G213400 Sobic009G213400 Sobic004G096300--Sobic009G213400 Sobic004G096300--Sobic003G264901 Sobic004G096300--Sobic006G053700 Sobic004G096300--Sobic001G053900 Sobic004G096300--Sobic007G014600 Sobic004G096300--Sobic008G152200 Sobic001G293800--Sobic004G096300 Sobic001G293800--Sobic003G264901 Sobic001G293800--Sobic001G377000 Sobic001G293800--Sobic010G172200 Sobic001G293800--Sobic003G153800 Sobic001G293800--Sobic007G071000 Sobic004G275200 Sobic004G275200 Sobic001G293800--Sobic004G275200 Sobic001G293800--Sobic006G053700 Sobic001G225400 Sobic001G225400 Sobic001G293800--Sobic001G225400 Sobic005G007700 Sobic005G007700 Sobic010G137400--Sobic005G007700 Sobic002G095900 Sobic002G095900 Sobic010G137400--Sobic002G095900 Sobic003G020600 Sobic003G020600 Sobic010G137400--Sobic003G020600 Sobic004G289600 Sobic004G289600 Sobic010G137400--Sobic004G289600 Sobic003G159450 Sobic003G159450 Sobic010G137400--Sobic003G159450 Sobic010G000700 Sobic010G000700 Sobic010G137400--Sobic010G000700 Sobic004G291800 Sobic004G291800 Sobic010G137400--Sobic004G291800 Sobic008G012900 Sobic008G012900 Sobic010G137400--Sobic008G012900 Sobic002G164400 Sobic002G164400 Sobic010G137400--Sobic002G164400 Sobic003G151800--Sobic003G402200 Sobic003G151800--Sobic009G205600 Sobic001G145050 Sobic001G145050 Sobic003G151800--Sobic001G145050 Sobic003G151800--Sobic002G271600 Sobic005G089000 Sobic005G089000 Sobic003G151800--Sobic005G089000 Sobic003G151800--Sobic006G053700 Sobic008G137800 Sobic008G137800 Sobic003G151800--Sobic008G137800 Sobic003G151800--Sobic007G014600 Sobic003G255100 Sobic003G255100 Sobic003G151800--Sobic003G255100
Octagon: transcription factors


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