Gene annotation
Transcriptome id Sobic.005G129000.1
Synonym
Functional annotation -
UniProt A0A1B6PS47
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.005G129000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G310500 strictosidine synthase, putative, expressed -
2 Sobic.001G125700 lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
3 Sobic.006G005500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
4 Sobic.006G005400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
5 Sobic.007G076000 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
6 Sobic.005G219100 patatin, putative, expressed -
7 Sobic.007G055600 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed K14174: beta-farnesene/exo-alpha-bergamotene synthase
8 Sobic.009G014600 Lipase class 3 family protein (At)(PubMedID : 27208977)@phospholipase, putative, expressed -
9 Sobic.005G219000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@patatin, putative, expressed -
10 Sobic.003G388400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
11 Sobic.005G182701 - -
12 Sobic.009G115400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.006G007100 cysteine proteinase At4g11310 precursor, putative, expressed -
14 Sobic.008G028600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY112, expressed -
15 Sobic.002G040400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
16 Sobic.008G077800 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.001G291500 - -
18 Sobic.006G007600 polyphenol oxidase, putative, expressed -
19 Sobic.002G087500 - -
20 Sobic.006G007650 - -


Gene co-expression network
sample Sobic005G129000 Sobic005G129000 Sobic001G310500 Sobic001G310500 Sobic005G129000--Sobic001G310500 Sobic001G125700 Sobic001G125700 Sobic005G129000--Sobic001G125700 Sobic006G005500 Sobic006G005500 Sobic005G129000--Sobic006G005500 Sobic006G005400 Sobic006G005400 Sobic005G129000--Sobic006G005400 Sobic007G076000 Sobic007G076000 Sobic005G129000--Sobic007G076000 Sobic005G219100 Sobic005G219100 Sobic005G129000--Sobic005G219100 Sobic007G055600 Sobic007G055600 Sobic005G129000--Sobic007G055600 Sobic009G014600 Sobic009G014600 Sobic005G129000--Sobic009G014600 Sobic005G219000 Sobic005G219000 Sobic005G129000--Sobic005G219000 Sobic006G180900 Sobic006G180900 Sobic001G310500--Sobic006G180900 Sobic007G181600 Sobic007G181600 Sobic001G310500--Sobic007G181600 Sobic005G210100 Sobic005G210100 Sobic001G310500--Sobic005G210100 Sobic001G351300 Sobic001G351300 Sobic001G310500--Sobic001G351300 Sobic001G262000 Sobic001G262000 Sobic001G310500--Sobic001G262000 Sobic001G310500--Sobic005G129000 Sobic002G282900 Sobic002G282900 Sobic001G310500--Sobic002G282900 Sobic007G090442 Sobic007G090442 Sobic001G310500--Sobic007G090442 Sobic010G095300 Sobic010G095300 Sobic001G310500--Sobic010G095300 Sobic001G125700--Sobic006G005500 Sobic001G125700--Sobic005G219000 Sobic001G125700--Sobic005G219100 Sobic008G028600 Sobic008G028600 Sobic001G125700--Sobic008G028600 Sobic001G125700--Sobic007G076000 Sobic002G040400 Sobic002G040400 Sobic001G125700--Sobic002G040400 Sobic001G125700--Sobic006G005400 Sobic001G125700--Sobic007G055600 Sobic006G007100 Sobic006G007100 Sobic001G125700--Sobic006G007100 Sobic006G005500--Sobic001G125700 Sobic006G005500--Sobic005G219000 Sobic006G005500--Sobic008G028600 Sobic006G005500--Sobic005G219100 Sobic006G005500--Sobic007G076000 Sobic006G005500--Sobic002G040400 Sobic006G005500--Sobic007G055600 Sobic006G005500--Sobic006G005400 Sobic006G007650 Sobic006G007650 Sobic006G005500--Sobic006G007650 Sobic006G005400--Sobic006G007100 Sobic006G005400--Sobic005G219100 Sobic006G005400--Sobic001G125700 Sobic006G005400--Sobic005G219000 Sobic006G005400--Sobic006G005500 Sobic006G007600 Sobic006G007600 Sobic006G005400--Sobic006G007600 Sobic009G115400 Sobic009G115400 Sobic006G005400--Sobic009G115400 Sobic003G388400 Sobic003G388400 Sobic006G005400--Sobic003G388400 Sobic001G291500 Sobic001G291500 Sobic006G005400--Sobic001G291500 Sobic007G076000--Sobic007G055600 Sobic005G182701 Sobic005G182701 Sobic007G076000--Sobic005G182701 Sobic007G076000--Sobic006G005500 Sobic007G076000--Sobic001G125700 Sobic007G076000--Sobic002G040400 Sobic007G076000--Sobic008G028600 Sobic007G076000--Sobic009G014600 Sobic007G076000--Sobic005G219000 Sobic007G076000--Sobic006G007650 Sobic005G219100--Sobic005G219000 Sobic005G219100--Sobic001G125700 Sobic005G219100--Sobic006G007100 Sobic005G219100--Sobic006G005500 Sobic005G219100--Sobic006G005400 Sobic005G219100--Sobic008G028600 Sobic008G077800 Sobic008G077800 Sobic005G219100--Sobic008G077800 Sobic005G219100--Sobic002G040400 Sobic008G028566 Sobic008G028566 Sobic005G219100--Sobic008G028566 Sobic007G055600--Sobic005G182701 Sobic007G055600--Sobic007G076000 Sobic007G055600--Sobic006G005500 Sobic007G055600--Sobic001G125700 Sobic007G055600--Sobic009G014600 Sobic001G056400 Sobic001G056400 Sobic007G055600--Sobic001G056400 Sobic007G055600--Sobic002G040400 Sobic007G055600--Sobic008G028600 Sobic007G055600--Sobic009G115400 Sobic009G014600--Sobic007G076000 Sobic009G014600--Sobic007G055600 Sobic009G014600--Sobic002G040400 Sobic009G014600--Sobic006G005500 Sobic009G014600--Sobic008G028600 Sobic009G014600--Sobic001G125700 Sobic002G087500 Sobic002G087500 Sobic009G014600--Sobic002G087500 Sobic009G014600--Sobic005G182701 Sobic009G014600--Sobic005G219000 Sobic005G219000--Sobic005G219100 Sobic005G219000--Sobic001G125700 Sobic005G219000--Sobic006G005500 Sobic005G219000--Sobic008G028600 Sobic005G219000--Sobic002G040400 Sobic005G219000--Sobic008G077800 Sobic005G219000--Sobic006G007100 Sobic005G219000--Sobic006G005400 Sobic005G219000--Sobic002G087500
Octagon: transcription factors


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