Gene annotation
Transcriptome id Sobic.002G293600.1
Synonym SYCOARATH, Sb02g032450
Functional annotation cysteinyl-tRNA synthetase, putative, expressed
UniProt C5X7S5
Pfam PF01406 PF09190
Panther DB PTHR10890:SF10 PTHR10890
NCBI CDD -
KEGG Orthology K01883; CARS, cysteinyl-tRNA synthetase
Gene Ontology GO:0000166; nucleotide binding GO:0004817cysteine-tRNA ligase activity GO:0005524ATP binding GO:0005737cytoplasm GO:0006423cysteinyl-tRNA aminoacylation


Orthologs (automatic annotation)
TAIR AT2G31170 : Cysteinyl-tRNA synthetase, class Ia family protein
RAP-DB (Rice) LOC_Os09g38420.1 : cysteinyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a014540 , Zm00025a008910
Brachypodium KQJ91428
Barley HORVU5Hr1G088330.3 , HORVU5Hr1G088330.2 , HORVU5Hr1G088330.5 , HORVU5Hr1G088330.4 , HORVU5Hr1G088330.7 , HORVU5Hr1G088330.6 , HORVU5Hr1G088330.1
Wheat TraesCS4A02G408000 , TraesCS5B02G359900 , TraesCS5D02G366500 , TraesCS5A02G357400 , TraesCS4B02G307500 , TraesCS4D02G305700 , TraesCS1D02G409000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
2 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
3 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
4 Sobic.003G149300 pentatricopeptide, putative, expressed -
5 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
6 Sobic.007G095500 expressed protein -
7 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
8 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
10 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
11 Sobic.004G225600 - -
12 Sobic.002G343400 tic20, putative, expressed -
13 Sobic.003G162800 expressed protein -
14 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
15 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
17 Sobic.002G143500 sulfate transporter 4.1, chloroplast precursor, putative, expressed K18059: sulfate transporter 4
18 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
19 Sobic.001G327800 uncharacterized mscS family protein, putative, expressed K16052: ynaI, MscS family membrane protein
20 Sobic.003G155300 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase


Gene co-expression network
sample Sobic002G293600 Sobic002G293600 Sobic001G382800 Sobic001G382800 Sobic002G293600--Sobic001G382800 Sobic003G067100 Sobic003G067100 Sobic002G293600--Sobic003G067100 Sobic003G040000 Sobic003G040000 Sobic002G293600--Sobic003G040000 Sobic003G149300 Sobic003G149300 Sobic002G293600--Sobic003G149300 Sobic009G129100 Sobic009G129100 Sobic002G293600--Sobic009G129100 Sobic007G095500 Sobic007G095500 Sobic002G293600--Sobic007G095500 Sobic006G058100 Sobic006G058100 Sobic002G293600--Sobic006G058100 Sobic003G128400 Sobic003G128400 Sobic002G293600--Sobic003G128400 Sobic003G434700 Sobic003G434700 Sobic002G293600--Sobic003G434700 Sobic010G255100 Sobic010G255100 Sobic001G382800--Sobic010G255100 Sobic001G382800--Sobic003G128400 Sobic008G090900 Sobic008G090900 Sobic001G382800--Sobic008G090900 Sobic001G003900 Sobic001G003900 Sobic001G382800--Sobic001G003900 Sobic002G156100 Sobic002G156100 Sobic001G382800--Sobic002G156100 Sobic001G375000 Sobic001G375000 Sobic001G382800--Sobic001G375000 Sobic006G088000 Sobic006G088000 Sobic001G382800--Sobic006G088000 Sobic001G382800--Sobic002G293600 Sobic003G045300 Sobic003G045300 Sobic001G382800--Sobic003G045300 Sobic005G014700 Sobic005G014700 Sobic003G067100--Sobic005G014700 Sobic003G234900 Sobic003G234900 Sobic003G067100--Sobic003G234900 Sobic001G102500 Sobic001G102500 Sobic003G067100--Sobic001G102500 Sobic004G238900 Sobic004G238900 Sobic003G067100--Sobic004G238900 Sobic003G067100--Sobic006G058100 Sobic003G067100--Sobic003G434700 Sobic002G043600 Sobic002G043600 Sobic003G067100--Sobic002G043600 Sobic003G067100--Sobic009G129100 Sobic004G163800 Sobic004G163800 Sobic003G067100--Sobic004G163800 Sobic003G040000--Sobic006G058100 Sobic003G040000--Sobic002G293600 Sobic009G127400 Sobic009G127400 Sobic003G040000--Sobic009G127400 Sobic003G162800 Sobic003G162800 Sobic003G040000--Sobic003G162800 Sobic003G327200 Sobic003G327200 Sobic003G040000--Sobic003G327200 Sobic003G040000--Sobic003G434700 Sobic007G076700 Sobic007G076700 Sobic003G040000--Sobic007G076700 Sobic003G040000--Sobic003G149300 Sobic001G022500 Sobic001G022500 Sobic003G040000--Sobic001G022500 Sobic003G149300--Sobic002G293600 Sobic003G149300--Sobic003G040000 Sobic003G149300--Sobic009G127400 Sobic003G161000 Sobic003G161000 Sobic003G149300--Sobic003G161000 Sobic001G514100 Sobic001G514100 Sobic003G149300--Sobic001G514100 Sobic003G155300 Sobic003G155300 Sobic003G149300--Sobic003G155300 Sobic005G197300 Sobic005G197300 Sobic003G149300--Sobic005G197300 Sobic001G261573 Sobic001G261573 Sobic003G149300--Sobic001G261573 Sobic003G149300--Sobic009G129100 Sobic003G168100 Sobic003G168100 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic004G185800 Sobic004G185800 Sobic009G129100--Sobic004G185800 Sobic009G132700 Sobic009G132700 Sobic009G129100--Sobic009G132700 Sobic008G067100 Sobic008G067100 Sobic007G095500--Sobic008G067100 Sobic004G208600 Sobic004G208600 Sobic007G095500--Sobic004G208600 Sobic004G225600 Sobic004G225600 Sobic007G095500--Sobic004G225600 Sobic007G095500--Sobic001G382800 Sobic007G095500--Sobic002G293600 Sobic002G343400 Sobic002G343400 Sobic007G095500--Sobic002G343400 Sobic007G095500--Sobic008G090900 Sobic001G494500 Sobic001G494500 Sobic007G095500--Sobic001G494500 Sobic007G095500--Sobic006G058100 Sobic002G143500 Sobic002G143500 Sobic006G058100--Sobic002G143500 Sobic006G058100--Sobic003G067100 Sobic006G058100--Sobic003G040000 Sobic001G166600 Sobic001G166600 Sobic006G058100--Sobic001G166600 Sobic004G236400 Sobic004G236400 Sobic006G058100--Sobic004G236400 Sobic006G058100--Sobic001G261573 Sobic010G176550 Sobic010G176550 Sobic006G058100--Sobic010G176550 Sobic006G058100--Sobic004G225600 Sobic009G094900 Sobic009G094900 Sobic006G058100--Sobic009G094900 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic005G184300 Sobic005G184300 Sobic003G128400--Sobic005G184300 Sobic004G003900 Sobic004G003900 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic003G128400--Sobic010G255100 Sobic003G434700--Sobic001G022500 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G434700--Sobic003G162800 Sobic003G434700--Sobic001G102500 Sobic003G434700--Sobic004G225600 Sobic003G434700--Sobic001G375000 Sobic003G434700--Sobic003G234900
Octagon: transcription factors


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