Gene annotation
Transcriptome id Sobic.010G098200.2,Sobic.010G098200.1
Synonym Sb10g008560, emb2004
Functional annotation peroxidase family protein, expressed
UniProt A0A1W0VS93 , A0A194YJ98
Pfam PF00560 PF13516 PF13516
Panther DB PTHR24106
NCBI CDD KOG4308; LRR-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G10510 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os06g13050.1 : peroxidase family protein, expressed
MaizeGDB (Corn) Zm00025a049421
Brachypodium KQK18801
Barley HORVU7Hr1G039610.1 , HORVU7Hr1G039610.2 , HORVU7Hr1G039610.3 , HORVU7Hr1G039610.4 , HORVU7Hr1G039610.5 , HORVU7Hr1G039610.6 , HORVU7Hr1G039610.7 , HORVU7Hr1G039610.8 , HORVU7Hr1G039610.9 , HORVU7Hr1G039610.23 , HORVU7Hr1G039610.22 , HORVU7Hr1G039610.21 , HORVU7Hr1G039610.20 , HORVU7Hr1G039610.27 , HORVU7Hr1G039610.26 , HORVU7Hr1G039610.25 , HORVU7Hr1G039610.24 , HORVU7Hr1G039610.28 , HORVU7Hr1G039610.30 , HORVU7Hr1G039610.31 , HORVU7Hr1G039610.32 , HORVU7Hr1G039610.33 , HORVU7Hr1G039610.34 , HORVU7Hr1G039610.35 , HORVU7Hr1G039610.37 , HORVU7Hr1G039610.38 , HORVU7Hr1G039610.39 , HORVU7Hr1G039610.18 , HORVU7Hr1G039610.19 , HORVU7Hr1G039610.12 , HORVU7Hr1G039610.16 , HORVU7Hr1G039610.17 , HORVU7Hr1G039610.14 , HORVU7Hr1G039610.15
Wheat TraesCS7D02G196000 , TraesCS7B02G100000 , TraesCS7A02G194400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G098200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G298100 expressed protein -
2 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
3 Sobic.007G017800 OsFBX142 - F-box domain containing protein, expressed -
4 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -
5 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
6 Sobic.001G166600 semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00145: N-acetyl-gamma-glutamyl-phosphate reductase
7 Sobic.006G155100 expressed protein -
8 Sobic.009G092900 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
9 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
10 Sobic.010G041400 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
11 Sobic.001G198400 mutS domain V family protein, expressed -
12 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
13 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
14 Sobic.002G143500 sulfate transporter 4.1, chloroplast precursor, putative, expressed K18059: sulfate transporter 4
15 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
16 Sobic.008G090900 expressed protein -
17 Sobic.002G356200 GCN5-related N-acetyltransferase, putative, expressed K14682: amino-acid N-acetyltransferase
18 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
19 Sobic.001G532600 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
20 Sobic.009G192300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42


Gene co-expression network
sample Sobic010G098200 Sobic010G098200 Sobic002G298100 Sobic002G298100 Sobic010G098200--Sobic002G298100 Sobic006G234700 Sobic006G234700 Sobic010G098200--Sobic006G234700 Sobic007G017800 Sobic007G017800 Sobic010G098200--Sobic007G017800 Sobic010G140400 Sobic010G140400 Sobic010G098200--Sobic010G140400 Sobic001G022500 Sobic001G022500 Sobic010G098200--Sobic001G022500 Sobic001G166600 Sobic001G166600 Sobic010G098200--Sobic001G166600 Sobic006G155100 Sobic006G155100 Sobic010G098200--Sobic006G155100 Sobic009G092900 Sobic009G092900 Sobic010G098200--Sobic009G092900 Sobic009G129100 Sobic009G129100 Sobic010G098200--Sobic009G129100 Sobic009G251200 Sobic009G251200 Sobic002G298100--Sobic009G251200 Sobic002G298100--Sobic010G098200 Sobic002G298100--Sobic010G140400 Sobic004G018300 Sobic004G018300 Sobic002G298100--Sobic004G018300 Sobic008G051200 Sobic008G051200 Sobic002G298100--Sobic008G051200 Sobic004G171200 Sobic004G171200 Sobic002G298100--Sobic004G171200 Sobic005G160100 Sobic005G160100 Sobic002G298100--Sobic005G160100 Sobic003G434700 Sobic003G434700 Sobic002G298100--Sobic003G434700 Sobic001G219600 Sobic001G219600 Sobic002G298100--Sobic001G219600 Sobic004G096400 Sobic004G096400 Sobic006G234700--Sobic004G096400 Sobic010G059500 Sobic010G059500 Sobic006G234700--Sobic010G059500 Sobic009G192300 Sobic009G192300 Sobic006G234700--Sobic009G192300 Sobic007G042400 Sobic007G042400 Sobic006G234700--Sobic007G042400 Sobic003G444800 Sobic003G444800 Sobic006G234700--Sobic003G444800 Sobic001G493200 Sobic001G493200 Sobic006G234700--Sobic001G493200 Sobic009G084900 Sobic009G084900 Sobic006G234700--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic006G234700--Sobic001G433800 Sobic002G083500 Sobic002G083500 Sobic006G234700--Sobic002G083500 Sobic001G405600 Sobic001G405600 Sobic007G017800--Sobic001G405600 Sobic002G103600 Sobic002G103600 Sobic007G017800--Sobic002G103600 Sobic003G143200 Sobic003G143200 Sobic007G017800--Sobic003G143200 Sobic004G185800 Sobic004G185800 Sobic007G017800--Sobic004G185800 Sobic010G034100 Sobic010G034100 Sobic007G017800--Sobic010G034100 Sobic008G162900 Sobic008G162900 Sobic007G017800--Sobic008G162900 Sobic009G177500 Sobic009G177500 Sobic007G017800--Sobic009G177500 Sobic007G017800--Sobic006G234700 Sobic008G063300 Sobic008G063300 Sobic007G017800--Sobic008G063300 Sobic010G145800 Sobic010G145800 Sobic010G140400--Sobic010G145800 Sobic010G140400--Sobic001G493200 Sobic010G140400--Sobic001G219600 Sobic010G140400--Sobic006G234700 Sobic007G203200 Sobic007G203200 Sobic010G140400--Sobic007G203200 Sobic003G443100 Sobic003G443100 Sobic010G140400--Sobic003G443100 Sobic010G140400--Sobic008G162900 Sobic010G279450 Sobic010G279450 Sobic010G140400--Sobic010G279450 Sobic001G227200 Sobic001G227200 Sobic010G140400--Sobic001G227200 Sobic001G022500--Sobic003G434700 Sobic004G225600 Sobic004G225600 Sobic001G022500--Sobic004G225600 Sobic004G003900 Sobic004G003900 Sobic001G022500--Sobic004G003900 Sobic003G162800 Sobic003G162800 Sobic001G022500--Sobic003G162800 Sobic001G003900 Sobic001G003900 Sobic001G022500--Sobic001G003900 Sobic003G067100 Sobic003G067100 Sobic001G022500--Sobic003G067100 Sobic001G375000 Sobic001G375000 Sobic001G022500--Sobic001G375000 Sobic001G099000 Sobic001G099000 Sobic001G022500--Sobic001G099000 Sobic003G327200 Sobic003G327200 Sobic001G022500--Sobic003G327200 Sobic007G207200 Sobic007G207200 Sobic001G166600--Sobic007G207200 Sobic002G143500 Sobic002G143500 Sobic001G166600--Sobic002G143500 Sobic006G058100 Sobic006G058100 Sobic001G166600--Sobic006G058100 Sobic001G166600--Sobic009G084900 Sobic004G236400 Sobic004G236400 Sobic001G166600--Sobic004G236400 Sobic009G245800 Sobic009G245800 Sobic001G166600--Sobic009G245800 Sobic001G166600--Sobic001G219600 Sobic003G141500 Sobic003G141500 Sobic001G166600--Sobic003G141500 Sobic002G359400 Sobic002G359400 Sobic001G166600--Sobic002G359400 Sobic008G090900 Sobic008G090900 Sobic006G155100--Sobic008G090900 Sobic006G155100--Sobic004G003900 Sobic001G433100 Sobic001G433100 Sobic006G155100--Sobic001G433100 Sobic006G155100--Sobic010G098200 Sobic001G478600 Sobic001G478600 Sobic006G155100--Sobic001G478600 Sobic006G155100--Sobic004G171200 Sobic002G356200 Sobic002G356200 Sobic006G155100--Sobic002G356200 Sobic001G346600 Sobic001G346600 Sobic006G155100--Sobic001G346600 Sobic006G155100--Sobic002G298100 Sobic009G092900--Sobic004G003900 Sobic009G092900--Sobic008G090900 Sobic003G045300 Sobic003G045300 Sobic009G092900--Sobic003G045300 Sobic002G181132 Sobic002G181132 Sobic009G092900--Sobic002G181132 Sobic005G117300 Sobic005G117300 Sobic009G092900--Sobic005G117300 Sobic004G079800 Sobic004G079800 Sobic009G092900--Sobic004G079800 Sobic003G128400 Sobic003G128400 Sobic009G092900--Sobic003G128400 Sobic009G092900--Sobic001G375000 Sobic009G092900--Sobic001G346600 Sobic003G168100 Sobic003G168100 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic003G234900 Sobic003G234900 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic009G129100--Sobic004G185800 Sobic009G132700 Sobic009G132700 Sobic009G129100--Sobic009G132700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.