Gene annotation
Transcriptome id Sobic.002G168500.1
Synonym Sb02g021250, RPS3, RPM1
Functional annotation NBS-LRR type disease resistance protein, putative, expressed
UniProt A0A1W0W4E3
Pfam PF00931
Panther DB PTHR23155 PTHR23155:SF614
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07040 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os11g45930.1 : NBS-LRR type disease resistance protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ91285
Barley -
Wheat TraesCS7B02G479900 , TraesCS7B02G479900
Populus -


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cDNA sequences
Sobic.002G168500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
2 Sobic.001G124100 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
3 Sobic.004G026500 expressed protein -
4 Sobic.009G193500 AGAP007115-PA, putative, expressed -
5 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
6 Sobic.002G339300 myosin-Vb, putative, expressed K10357: myosin V
7 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
8 Sobic.002G168300 RGH2B, putative, expressed -
9 Sobic.003G381200 KH domain containing protein, putative, expressed K14945: protein quaking
10 Sobic.001G219700 pentatricopeptide, putative, expressed -
11 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
12 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
13 Sobic.006G186600 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
14 Sobic.007G065100 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
15 Sobic.007G023200 OsFBX178 - F-box domain containing protein, expressed -
16 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
17 Sobic.004G248400 APO, putative, expressed -
18 Sobic.001G120500 toc64, putative, expressed -
19 Sobic.008G016300 expressed protein -
20 Sobic.003G369400 expressed protein -


Gene co-expression network
sample Sobic002G168500 Sobic002G168500 Sobic002G276100 Sobic002G276100 Sobic002G168500--Sobic002G276100 Sobic001G124100 Sobic001G124100 Sobic002G168500--Sobic001G124100 Sobic004G026500 Sobic004G026500 Sobic002G168500--Sobic004G026500 Sobic009G193500 Sobic009G193500 Sobic002G168500--Sobic009G193500 Sobic008G172300 Sobic008G172300 Sobic002G168500--Sobic008G172300 Sobic002G339300 Sobic002G339300 Sobic002G168500--Sobic002G339300 Sobic005G014700 Sobic005G014700 Sobic002G168500--Sobic005G014700 Sobic002G168300 Sobic002G168300 Sobic002G168500--Sobic002G168300 Sobic003G381200 Sobic003G381200 Sobic002G168500--Sobic003G381200 Sobic002G276100--Sobic003G381200 Sobic002G276100--Sobic004G026500 Sobic004G181700 Sobic004G181700 Sobic002G276100--Sobic004G181700 Sobic001G159400 Sobic001G159400 Sobic002G276100--Sobic001G159400 Sobic010G138000 Sobic010G138000 Sobic002G276100--Sobic010G138000 Sobic002G276100--Sobic002G168500 Sobic002G276100--Sobic009G193500 Sobic002G276100--Sobic008G172300 Sobic001G268200 Sobic001G268200 Sobic002G276100--Sobic001G268200 Sobic001G124100--Sobic004G026500 Sobic001G219700 Sobic001G219700 Sobic001G124100--Sobic001G219700 Sobic005G142800 Sobic005G142800 Sobic001G124100--Sobic005G142800 Sobic001G124100--Sobic008G172300 Sobic001G396000 Sobic001G396000 Sobic001G124100--Sobic001G396000 Sobic001G124100--Sobic002G339300 Sobic001G124100--Sobic002G168500 Sobic006G233700 Sobic006G233700 Sobic001G124100--Sobic006G233700 Sobic006G219600 Sobic006G219600 Sobic001G124100--Sobic006G219600 Sobic004G026500--Sobic008G172300 Sobic004G026500--Sobic001G124100 Sobic004G026500--Sobic009G193500 Sobic004G026500--Sobic001G219700 Sobic001G072700 Sobic001G072700 Sobic004G026500--Sobic001G072700 Sobic004G026500--Sobic002G339300 Sobic003G203300 Sobic003G203300 Sobic004G026500--Sobic003G203300 Sobic007G227700 Sobic007G227700 Sobic004G026500--Sobic007G227700 Sobic004G026500--Sobic002G276100 Sobic009G193500--Sobic004G026500 Sobic009G193500--Sobic002G339300 Sobic009G193500--Sobic002G276100 Sobic009G193500--Sobic001G124100 Sobic007G103100 Sobic007G103100 Sobic009G193500--Sobic007G103100 Sobic009G193500--Sobic002G168500 Sobic009G193500--Sobic008G172300 Sobic009G193500--Sobic001G219700 Sobic006G186600 Sobic006G186600 Sobic009G193500--Sobic006G186600 Sobic008G172300--Sobic004G026500 Sobic009G014100 Sobic009G014100 Sobic008G172300--Sobic009G014100 Sobic003G340600 Sobic003G340600 Sobic008G172300--Sobic003G340600 Sobic002G345700 Sobic002G345700 Sobic008G172300--Sobic002G345700 Sobic008G172300--Sobic001G124100 Sobic010G197000 Sobic010G197000 Sobic008G172300--Sobic010G197000 Sobic008G172300--Sobic005G142800 Sobic008G172300--Sobic002G168300 Sobic002G167500 Sobic002G167500 Sobic008G172300--Sobic002G167500 Sobic004G262700 Sobic004G262700 Sobic002G339300--Sobic004G262700 Sobic002G339300--Sobic004G026500 Sobic002G339300--Sobic009G193500 Sobic002G339300--Sobic001G124100 Sobic002G339300--Sobic001G396000 Sobic003G193200 Sobic003G193200 Sobic002G339300--Sobic003G193200 Sobic003G190000 Sobic003G190000 Sobic002G339300--Sobic003G190000 Sobic002G339300--Sobic002G168500 Sobic002G339300--Sobic010G197000 Sobic003G067100 Sobic003G067100 Sobic005G014700--Sobic003G067100 Sobic001G102500 Sobic001G102500 Sobic005G014700--Sobic001G102500 Sobic002G043600 Sobic002G043600 Sobic005G014700--Sobic002G043600 Sobic001G327800 Sobic001G327800 Sobic005G014700--Sobic001G327800 Sobic010G255100 Sobic010G255100 Sobic005G014700--Sobic010G255100 Sobic004G238900 Sobic004G238900 Sobic005G014700--Sobic004G238900 Sobic004G163800 Sobic004G163800 Sobic005G014700--Sobic004G163800 Sobic002G156100 Sobic002G156100 Sobic005G014700--Sobic002G156100 Sobic001G032700 Sobic001G032700 Sobic005G014700--Sobic001G032700 Sobic004G248400 Sobic004G248400 Sobic002G168300--Sobic004G248400 Sobic002G168300--Sobic008G172300 Sobic002G168300--Sobic003G381200 Sobic002G168300--Sobic004G026500 Sobic002G168300--Sobic001G102500 Sobic007G023200 Sobic007G023200 Sobic002G168300--Sobic007G023200 Sobic002G168300--Sobic009G014100 Sobic004G333400 Sobic004G333400 Sobic002G168300--Sobic004G333400 Sobic002G168300--Sobic001G219700 Sobic001G090500 Sobic001G090500 Sobic003G381200--Sobic001G090500 Sobic003G381200--Sobic001G159400 Sobic003G381200--Sobic002G276100 Sobic003G381200--Sobic002G168300 Sobic003G381200--Sobic001G102500 Sobic007G065100 Sobic007G065100 Sobic003G381200--Sobic007G065100 Sobic003G381200--Sobic008G172300 Sobic003G138500 Sobic003G138500 Sobic003G381200--Sobic003G138500 Sobic003G381200--Sobic004G026500
Octagon: transcription factors


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