Gene annotation
Transcriptome id Sobic.010G055700.3,Sobic.010G055700.1,Sobic.010G055700.6,Sobic.010G055700.4,Sobic.010G055700.5,Sobic.010G055700.2
Synonym Sb10g004860
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1W0VRN0 , A0A1W0VRP0 , A0A1W0VRM0 , A0A1W0VRN4 , A0A1W0VRL6 , A0A1W0VRN9
Pfam PF13176 PF13176 PF02096
Panther DB PTHR12428 PTHR12428:SF22
NCBI CDD KOG1239; Inner membrane protein translocase involved in respiratory chain assembly
KEGG Orthology K03217; yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
Gene Ontology GO:0005515; protein binding GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G44370 : Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain
RAP-DB (Rice) LOC_Os06g07474.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049874
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G055700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
2 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
3 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
4 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
5 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
6 Sobic.001G401500 programmed cell death protein 2, putative, expressed K14801: pre-rRNA-processing protein TSR4
7 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
8 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
9 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
10 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
11 Sobic.003G171500 dnaJ domain containing protein, expressed -
12 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
13 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
14 Sobic.007G207200 phenylalanyl-tRNA synthetase beta chain, putative, expressed K01890: FARSB, phenylalanyl-tRNA synthetase beta chain
15 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
16 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
17 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2
18 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
19 Sobic.009G201700 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
20 Sobic.010G080700 DNA-directed RNA polymerase subunit, putative, expressed K03021: RPC2, DNA-directed RNA polymerase III subunit RPC2


Gene co-expression network
sample Sobic010G055700 Sobic010G055700 Sobic010G003400 Sobic010G003400 Sobic010G055700--Sobic010G003400 Sobic006G086600 Sobic006G086600 Sobic010G055700--Sobic006G086600 Sobic003G146600 Sobic003G146600 Sobic010G055700--Sobic003G146600 Sobic010G059500 Sobic010G059500 Sobic010G055700--Sobic010G059500 Sobic002G235200 Sobic002G235200 Sobic010G055700--Sobic002G235200 Sobic001G401500 Sobic001G401500 Sobic010G055700--Sobic001G401500 Sobic008G160000 Sobic008G160000 Sobic010G055700--Sobic008G160000 Sobic008G051200 Sobic008G051200 Sobic010G055700--Sobic008G051200 Sobic001G145400 Sobic001G145400 Sobic010G055700--Sobic001G145400 Sobic010G003400--Sobic006G086600 Sobic001G453400 Sobic001G453400 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic009G101200 Sobic009G101200 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic001G089600 Sobic001G089600 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic003G308500 Sobic003G308500 Sobic003G146600--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic003G146600--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic003G146600--Sobic006G002800 Sobic003G146600--Sobic002G235200 Sobic003G146600--Sobic001G145400 Sobic002G150700 Sobic002G150700 Sobic003G146600--Sobic002G150700 Sobic001G065100 Sobic001G065100 Sobic003G146600--Sobic001G065100 Sobic003G039000 Sobic003G039000 Sobic003G146600--Sobic003G039000 Sobic003G012000 Sobic003G012000 Sobic003G146600--Sobic003G012000 Sobic009G084900 Sobic009G084900 Sobic010G059500--Sobic009G084900 Sobic009G131300 Sobic009G131300 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic006G077200 Sobic006G077200 Sobic010G059500--Sobic006G077200 Sobic001G493200 Sobic001G493200 Sobic010G059500--Sobic001G493200 Sobic002G235200--Sobic006G086600 Sobic002G235200--Sobic001G089600 Sobic002G235200--Sobic001G145400 Sobic002G235200--Sobic010G059500 Sobic002G235200--Sobic003G146600 Sobic006G166200 Sobic006G166200 Sobic002G235200--Sobic006G166200 Sobic003G036400 Sobic003G036400 Sobic002G235200--Sobic003G036400 Sobic002G235200--Sobic004G320500 Sobic002G235200--Sobic004G224600 Sobic004G340400 Sobic004G340400 Sobic001G401500--Sobic004G340400 Sobic001G259000 Sobic001G259000 Sobic001G401500--Sobic001G259000 Sobic001G401500--Sobic010G007100 Sobic009G211200 Sobic009G211200 Sobic001G401500--Sobic009G211200 Sobic001G244300 Sobic001G244300 Sobic001G401500--Sobic001G244300 Sobic006G193300 Sobic006G193300 Sobic001G401500--Sobic006G193300 Sobic001G401500--Sobic009G101200 Sobic001G401500--Sobic010G055700 Sobic001G401500--Sobic006G086600 Sobic008G160000--Sobic004G340400 Sobic001G455800 Sobic001G455800 Sobic008G160000--Sobic001G455800 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic008G160000--Sobic001G145400 Sobic008G160000--Sobic006G002800 Sobic008G160000--Sobic004G224600 Sobic004G171200 Sobic004G171200 Sobic008G051200--Sobic004G171200 Sobic001G251100 Sobic001G251100 Sobic008G051200--Sobic001G251100 Sobic006G125900 Sobic006G125900 Sobic008G051200--Sobic006G125900 Sobic004G185800 Sobic004G185800 Sobic008G051200--Sobic004G185800 Sobic008G051200--Sobic001G493200 Sobic008G051200--Sobic001G089600 Sobic008G051200--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic008G051200--Sobic001G393900 Sobic008G051200--Sobic004G030800 Sobic001G145400--Sobic006G086600 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic001G145400--Sobic004G340400 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000
Octagon: transcription factors


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