Gene annotation
Transcriptome id Sobic.008G133500.1
Synonym Sb08g018560
Functional annotation diaminopimelate epimerase, chloroplast precursor, putative, expressed
UniProt A0A1B6PDF1
Pfam PF01678
Panther DB PTHR31689 PTHR31689:SF0
NCBI CDD -
KEGG Orthology K01778; diaminopimelate epimerase
Gene Ontology GO:0009089; lysine biosynthetic process via diaminopimelate GO:0008837diaminopimelate epimerase activity


Orthologs (automatic annotation)
TAIR AT3G53580 : diaminopimelate epimerase family protein
RAP-DB (Rice) LOC_Os12g37960.1 : diaminopimelate epimerase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a025431 , Zm00025a004206
Brachypodium KQJ86215 , KQJ86216
Barley -
Wheat TraesCS5A02G083200 , TraesCS5B02G089300 , TraesCS5D02G095700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G185900 RNA recognition motif containing protein, expressed -
2 Sobic.004G177100 RNA methyltransferase protein, putative, expressed K15430: TRM11, tRNA (guanine10-N2)-methyltransferase
3 Sobic.006G179700 Ser/Thr-rich protein T10 in DGCR region, putative, expressed -
4 Sobic.009G013900 ankyrin repeat domain-containing protein 28, putative, expressed -
5 Sobic.006G242300 - -
6 Sobic.008G171800 WD domain, G-beta repeat domain containing protein, expressed K14830: MAK11, protein MAK11
7 Sobic.006G177300 ATFUC1, putative, expressed K01206: alpha-L-fucosidase
8 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
9 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
11 Sobic.001G045000 CAMK_CAMK_like.24 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
12 Sobic.008G003600 PMR5, putative, expressed -
13 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
14 Sobic.009G213600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@green ripe-like, putative, expressed -
15 Sobic.001G040300 expressed protein -
16 Sobic.005G164700 h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed K11128: GAR1, H/ACA ribonucleoprotein complex subunit 1
17 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase
18 Sobic.007G136700 YGL010w, putative, expressed -
19 Sobic.004G250300 eukaryotic aspartyl protease domain containing protein, expressed -
20 Sobic.005G191600 OsSigP7 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K09647: mitochondrial inner membrane protease subunit 1


Gene co-expression network
sample Sobic008G133500 Sobic008G133500 Sobic008G185900 Sobic008G185900 Sobic008G133500--Sobic008G185900 Sobic004G177100 Sobic004G177100 Sobic008G133500--Sobic004G177100 Sobic006G179700 Sobic006G179700 Sobic008G133500--Sobic006G179700 Sobic009G013900 Sobic009G013900 Sobic008G133500--Sobic009G013900 Sobic006G242300 Sobic006G242300 Sobic008G133500--Sobic006G242300 Sobic008G171800 Sobic008G171800 Sobic008G133500--Sobic008G171800 Sobic006G177300 Sobic006G177300 Sobic008G133500--Sobic006G177300 Sobic001G041200 Sobic001G041200 Sobic008G133500--Sobic001G041200 Sobic003G128000 Sobic003G128000 Sobic008G133500--Sobic003G128000 Sobic001G141300 Sobic001G141300 Sobic008G185900--Sobic001G141300 Sobic003G401400 Sobic003G401400 Sobic008G185900--Sobic003G401400 Sobic001G341300 Sobic001G341300 Sobic008G185900--Sobic001G341300 Sobic002G376400 Sobic002G376400 Sobic008G185900--Sobic002G376400 Sobic008G185900--Sobic008G133500 Sobic002G279100 Sobic002G279100 Sobic008G185900--Sobic002G279100 Sobic004G216700 Sobic004G216700 Sobic008G185900--Sobic004G216700 Sobic008G185900--Sobic008G171800 Sobic006G241200 Sobic006G241200 Sobic008G185900--Sobic006G241200 Sobic001G091900 Sobic001G091900 Sobic004G177100--Sobic001G091900 Sobic008G103900 Sobic008G103900 Sobic004G177100--Sobic008G103900 Sobic007G034400 Sobic007G034400 Sobic004G177100--Sobic007G034400 Sobic007G143000 Sobic007G143000 Sobic004G177100--Sobic007G143000 Sobic002G392800 Sobic002G392800 Sobic004G177100--Sobic002G392800 Sobic001G057200 Sobic001G057200 Sobic004G177100--Sobic001G057200 Sobic004G177100--Sobic008G133500 Sobic006G281500 Sobic006G281500 Sobic004G177100--Sobic006G281500 Sobic006G243400 Sobic006G243400 Sobic004G177100--Sobic006G243400 Sobic010G050200 Sobic010G050200 Sobic006G179700--Sobic010G050200 Sobic002G342500 Sobic002G342500 Sobic006G179700--Sobic002G342500 Sobic006G179700--Sobic006G177300 Sobic006G038200 Sobic006G038200 Sobic006G179700--Sobic006G038200 Sobic010G212200 Sobic010G212200 Sobic006G179700--Sobic010G212200 Sobic001G112700 Sobic001G112700 Sobic006G179700--Sobic001G112700 Sobic003G198500 Sobic003G198500 Sobic006G179700--Sobic003G198500 Sobic008G088830 Sobic008G088830 Sobic006G179700--Sobic008G088830 Sobic008G156300 Sobic008G156300 Sobic006G179700--Sobic008G156300 Sobic005G164700 Sobic005G164700 Sobic009G013900--Sobic005G164700 Sobic001G230900 Sobic001G230900 Sobic009G013900--Sobic001G230900 Sobic009G026200 Sobic009G026200 Sobic009G013900--Sobic009G026200 Sobic001G040300 Sobic001G040300 Sobic009G013900--Sobic001G040300 Sobic008G136000 Sobic008G136000 Sobic009G013900--Sobic008G136000 Sobic009G213600 Sobic009G213600 Sobic009G013900--Sobic009G213600 Sobic007G187400 Sobic007G187400 Sobic009G013900--Sobic007G187400 Sobic010G060600 Sobic010G060600 Sobic009G013900--Sobic010G060600 Sobic009G013900--Sobic008G133500 Sobic006G242300--Sobic001G041200 Sobic003G045400 Sobic003G045400 Sobic006G242300--Sobic003G045400 Sobic006G056600 Sobic006G056600 Sobic006G242300--Sobic006G056600 Sobic009G133400 Sobic009G133400 Sobic006G242300--Sobic009G133400 Sobic003G119400 Sobic003G119400 Sobic006G242300--Sobic003G119400 Sobic001G067900 Sobic001G067900 Sobic006G242300--Sobic001G067900 Sobic009G033900 Sobic009G033900 Sobic006G242300--Sobic009G033900 Sobic004G072800 Sobic004G072800 Sobic006G242300--Sobic004G072800 Sobic003G043100 Sobic003G043100 Sobic006G242300--Sobic003G043100 Sobic002G206500 Sobic002G206500 Sobic008G171800--Sobic002G206500 Sobic003G407600 Sobic003G407600 Sobic008G171800--Sobic003G407600 Sobic002G262100 Sobic002G262100 Sobic008G171800--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic008G171800--Sobic004G173100 Sobic006G198600 Sobic006G198600 Sobic008G171800--Sobic006G198600 Sobic008G171800--Sobic008G185900 Sobic008G171800--Sobic001G141300 Sobic004G130200 Sobic004G130200 Sobic008G171800--Sobic004G130200 Sobic008G171800--Sobic003G401400 Sobic006G000600 Sobic006G000600 Sobic006G177300--Sobic006G000600 Sobic006G177300--Sobic001G057200 Sobic001G366800 Sobic001G366800 Sobic006G177300--Sobic001G366800 Sobic001G242800 Sobic001G242800 Sobic006G177300--Sobic001G242800 Sobic002G143000 Sobic002G143000 Sobic006G177300--Sobic002G143000 Sobic002G259400 Sobic002G259400 Sobic006G177300--Sobic002G259400 Sobic006G177300--Sobic006G179700 Sobic003G376400 Sobic003G376400 Sobic006G177300--Sobic003G376400 Sobic001G322000 Sobic001G322000 Sobic006G177300--Sobic001G322000 Sobic001G041200--Sobic006G242300 Sobic001G041200--Sobic003G119400 Sobic006G257001 Sobic006G257001 Sobic001G041200--Sobic006G257001 Sobic006G034800 Sobic006G034800 Sobic001G041200--Sobic006G034800 Sobic001G041200--Sobic001G067900 Sobic001G041200--Sobic002G259400 Sobic001G105100 Sobic001G105100 Sobic001G041200--Sobic001G105100 Sobic001G041200--Sobic006G056600 Sobic001G041200--Sobic009G033900 Sobic001G392100 Sobic001G392100 Sobic003G128000--Sobic001G392100 Sobic009G155400 Sobic009G155400 Sobic003G128000--Sobic009G155400 Sobic001G009400 Sobic001G009400 Sobic003G128000--Sobic001G009400 Sobic008G163400 Sobic008G163400 Sobic003G128000--Sobic008G163400 Sobic004G217900 Sobic004G217900 Sobic003G128000--Sobic004G217900 Sobic001G149100 Sobic001G149100 Sobic003G128000--Sobic001G149100 Sobic003G239000 Sobic003G239000 Sobic003G128000--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic003G128000--Sobic001G347100 Sobic001G254400 Sobic001G254400 Sobic003G128000--Sobic001G254400
Octagon: transcription factors


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