Gene annotation
Transcriptome id Sobic.002G206500.1
Synonym Sb02g025090
Functional annotation queuine tRNA-ribosyltransferase, putative, expressed
UniProt C5XCY4
Pfam PF01702
Panther DB PTHR21148 PTHR21148:SF22
NCBI CDD -
KEGG Orthology K00773; tgt, queuine tRNA-ribosyltransferase
Gene Ontology GO:0008616; queuosine biosynthetic process GO:0008479queuine tRNA-ribosyltransferase activity GO:0006400tRNA modification


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os09g29420.1 : queuine tRNA-ribosyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a047065
Brachypodium PNT64760
Barley HORVU5Hr1G070240.21 , HORVU5Hr1G070240.20 , HORVU5Hr1G070240.23 , HORVU5Hr1G070240.22 , HORVU5Hr1G070240.25 , HORVU5Hr1G070240.24 , HORVU5Hr1G070240.27 , HORVU5Hr1G070240.26 , HORVU5Hr1G070240.29 , HORVU5Hr1G070240.28 , HORVU5Hr1G070240.36 , HORVU5Hr1G070240.37 , HORVU5Hr1G070240.34 , HORVU5Hr1G070240.35 , HORVU5Hr1G070240.32 , HORVU5Hr1G070240.33 , HORVU5Hr1G070240.30 , HORVU5Hr1G070240.31 , HORVU5Hr1G070240.38 , HORVU5Hr1G070240.39 , HORVU5Hr1G070240.43 , HORVU5Hr1G070240.42 , HORVU5Hr1G070240.41 , HORVU5Hr1G070240.40 , HORVU5Hr1G070240.45 , HORVU5Hr1G070240.44 , HORVU5Hr1G070240.6 , HORVU5Hr1G070240.7 , HORVU5Hr1G070240.4 , HORVU5Hr1G070240.5 , HORVU5Hr1G070240.2 , HORVU5Hr1G070240.3 , HORVU5Hr1G070240.1 , HORVU5Hr1G070240.8 , HORVU5Hr1G070240.9 , HORVU2Hr1G063700.1 , HORVU5Hr1G070240.18 , HORVU5Hr1G070240.19 , HORVU5Hr1G070240.14 , HORVU5Hr1G070240.15 , HORVU5Hr1G070240.16 , HORVU5Hr1G070240.17 , HORVU5Hr1G070240.10 , HORVU5Hr1G070240.11 , HORVU5Hr1G070240.12 , HORVU5Hr1G070240.13 , HORVU2Hr1G018230.1 , HORVU5Hr1G097970.1
Wheat TraesCS5B02G246500 , TraesCS5A02G248800 , TraesCS5D02G256000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G171800 WD domain, G-beta repeat domain containing protein, expressed K14830: MAK11, protein MAK11
2 Sobic.001G157300 expressed protein K14793: ribosomal RNA-processing protein 9
3 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
4 Sobic.001G367500 arginyl-tRNA synthetase, putative, expressed -
5 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
6 Sobic.009G032100 nitrogen regulatory protein P-II, putative, expressed -
7 Sobic.002G092050 - -
8 Sobic.006G126300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
9 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
10 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
11 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1
12 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
13 Sobic.007G188600 tRNA synthetase class II core domain containing protein, expressed K01880: GARS, glycyl-tRNA synthetase
14 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
15 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
16 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
17 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
18 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
19 Sobic.004G231600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45


Gene co-expression network
sample Sobic002G206500 Sobic002G206500 Sobic008G171800 Sobic008G171800 Sobic002G206500--Sobic008G171800 Sobic001G157300 Sobic001G157300 Sobic002G206500--Sobic001G157300 Sobic006G198600 Sobic006G198600 Sobic002G206500--Sobic006G198600 Sobic001G367500 Sobic001G367500 Sobic002G206500--Sobic001G367500 Sobic002G262100 Sobic002G262100 Sobic002G206500--Sobic002G262100 Sobic009G032100 Sobic009G032100 Sobic002G206500--Sobic009G032100 Sobic002G092050 Sobic002G092050 Sobic002G206500--Sobic002G092050 Sobic006G126300 Sobic006G126300 Sobic002G206500--Sobic006G126300 Sobic002G238000 Sobic002G238000 Sobic002G206500--Sobic002G238000 Sobic008G171800--Sobic002G206500 Sobic003G407600 Sobic003G407600 Sobic008G171800--Sobic003G407600 Sobic008G171800--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic008G171800--Sobic004G173100 Sobic008G171800--Sobic006G198600 Sobic008G185900 Sobic008G185900 Sobic008G171800--Sobic008G185900 Sobic001G141300 Sobic001G141300 Sobic008G171800--Sobic001G141300 Sobic004G130200 Sobic004G130200 Sobic008G171800--Sobic004G130200 Sobic003G401400 Sobic003G401400 Sobic008G171800--Sobic003G401400 Sobic009G071700 Sobic009G071700 Sobic001G157300--Sobic009G071700 Sobic001G157300--Sobic002G262100 Sobic001G157300--Sobic006G198600 Sobic001G119600 Sobic001G119600 Sobic001G157300--Sobic001G119600 Sobic006G251600 Sobic006G251600 Sobic001G157300--Sobic006G251600 Sobic003G123200 Sobic003G123200 Sobic001G157300--Sobic003G123200 Sobic007G137350 Sobic007G137350 Sobic001G157300--Sobic007G137350 Sobic003G425100 Sobic003G425100 Sobic001G157300--Sobic003G425100 Sobic008G049100 Sobic008G049100 Sobic001G157300--Sobic008G049100 Sobic006G198600--Sobic003G123200 Sobic006G198600--Sobic009G071700 Sobic001G401400 Sobic001G401400 Sobic006G198600--Sobic001G401400 Sobic008G163500 Sobic008G163500 Sobic006G198600--Sobic008G163500 Sobic006G198600--Sobic006G251600 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic004G036700 Sobic004G036700 Sobic006G198600--Sobic004G036700 Sobic006G198600--Sobic001G157300 Sobic005G145300 Sobic005G145300 Sobic001G367500--Sobic005G145300 Sobic009G238100 Sobic009G238100 Sobic001G367500--Sobic009G238100 Sobic009G036300 Sobic009G036300 Sobic001G367500--Sobic009G036300 Sobic006G186000 Sobic006G186000 Sobic001G367500--Sobic006G186000 Sobic003G332900 Sobic003G332900 Sobic001G367500--Sobic003G332900 Sobic010G074100 Sobic010G074100 Sobic001G367500--Sobic010G074100 Sobic008G148400 Sobic008G148400 Sobic001G367500--Sobic008G148400 Sobic003G030400 Sobic003G030400 Sobic001G367500--Sobic003G030400 Sobic010G074200 Sobic010G074200 Sobic001G367500--Sobic010G074200 Sobic002G262100--Sobic001G119600 Sobic002G399200 Sobic002G399200 Sobic002G262100--Sobic002G399200 Sobic002G378100 Sobic002G378100 Sobic002G262100--Sobic002G378100 Sobic002G262100--Sobic008G163500 Sobic001G422500 Sobic001G422500 Sobic002G262100--Sobic001G422500 Sobic002G262100--Sobic001G157300 Sobic002G262100--Sobic004G173100 Sobic002G262100--Sobic003G425100 Sobic002G262100--Sobic006G198600 Sobic001G426400 Sobic001G426400 Sobic009G032100--Sobic001G426400 Sobic009G032100--Sobic009G238100 Sobic009G032100--Sobic008G148400 Sobic009G032100--Sobic006G186000 Sobic006G265400 Sobic006G265400 Sobic009G032100--Sobic006G265400 Sobic001G423100 Sobic001G423100 Sobic009G032100--Sobic001G423100 Sobic009G032100--Sobic001G367500 Sobic009G032100--Sobic005G145300 Sobic009G032100--Sobic003G030400 Sobic002G092050--Sobic002G378100 Sobic006G128400 Sobic006G128400 Sobic002G092050--Sobic006G128400 Sobic006G193300 Sobic006G193300 Sobic002G092050--Sobic006G193300 Sobic008G038600 Sobic008G038600 Sobic002G092050--Sobic008G038600 Sobic004G171200 Sobic004G171200 Sobic002G092050--Sobic004G171200 Sobic006G125900 Sobic006G125900 Sobic002G092050--Sobic006G125900 Sobic007G097400 Sobic007G097400 Sobic002G092050--Sobic007G097400 Sobic001G501400 Sobic001G501400 Sobic002G092050--Sobic001G501400 Sobic002G092050--Sobic002G238000 Sobic010G083900 Sobic010G083900 Sobic006G126300--Sobic010G083900 Sobic003G322200 Sobic003G322200 Sobic006G126300--Sobic003G322200 Sobic001G081300 Sobic001G081300 Sobic006G126300--Sobic001G081300 Sobic001G390900 Sobic001G390900 Sobic006G126300--Sobic001G390900 Sobic006G126300--Sobic006G198600 Sobic006G126300--Sobic001G401400 Sobic005G028300 Sobic005G028300 Sobic006G126300--Sobic005G028300 Sobic006G126300--Sobic003G123200 Sobic003G419800 Sobic003G419800 Sobic006G126300--Sobic003G419800 Sobic005G100900 Sobic005G100900 Sobic002G238000--Sobic005G100900 Sobic008G165900 Sobic008G165900 Sobic002G238000--Sobic008G165900 Sobic002G238000--Sobic009G071700 Sobic002G238000--Sobic006G125900 Sobic002G238000--Sobic002G262100 Sobic010G228700 Sobic010G228700 Sobic002G238000--Sobic010G228700 Sobic001G224200 Sobic001G224200 Sobic002G238000--Sobic001G224200 Sobic002G238000--Sobic002G092050 Sobic004G268100 Sobic004G268100 Sobic002G238000--Sobic004G268100
Octagon: transcription factors


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