Gene annotation
Transcriptome id Sobic.003G402000.1,Sobic.003G402000.2,Sobic.003G402000.3
Synonym Sb03g043810, ZFN1
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A1B6Q7U3 , A0A1B6Q7U1
Pfam PF00642
Panther DB PTHR12506 PTHR12506:SF21
NCBI CDD KOG1677; CCCH-type Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02830 : zinc finger protein 1
RAP-DB (Rice) LOC_Os01g68860.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a026291 , Zm00025a039343
Brachypodium KQK11206
Barley -
Wheat TraesCS3A02G423200 , TraesCS3A02G423200 , TraesCS3A02G423200 , TraesCS3A02G423200 , TraesCS3A02G423200 , TraesCS3A02G423200 , TraesCS3A02G423200 , TraesCS3B02G458800 , TraesCS3B02G458800 , TraesCS3B02G458800 , TraesCS3B02G458800 , TraesCS3B02G458800 , TraesCS3B02G458800 , TraesCS3A02G423200 , TraesCS3D02G418400 , TraesCS3D02G418400 , TraesCS3D02G418400 , TraesCS3D02G418400 , TraesCS3D02G418400 , TraesCS3D02G418400
Populus -


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cDNA sequences
Sobic.003G402000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G020100 expressed protein -
2 Sobic.004G268000 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
3 Sobic.008G091400 nucleoside diphosphate kinase, putative, expressed -
4 Sobic.K031800 inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
5 Sobic.009G140800 DUF647 domain containing protein, putative, expressed -
6 Sobic.009G063100 Mitochondrial substrate carrier family protein(PubMedID : 26465154)@mitochondrial carrier protein, putative, expressed -
7 Sobic.008G188600 glyoxalase family protein, putative, expressed -
8 Sobic.007G181400 TraB family protein, putative, expressed -
9 Sobic.007G136200 expressed protein -
10 Sobic.005G110502 - -
11 Sobic.002G172700 Galactose mutarotase-like superfamily protein(PubMedID : 26465154)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
12 Sobic.004G206100 transmembrane protein 17, putative, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
13 Sobic.003G219200 MEE18, putative, expressed -
14 Sobic.006G038500 tRNA-dihydrouridine synthase, putative, expressed K05539: tRNA-dihydrouridine synthase A
15 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
16 Sobic.001G261545 - K01669: deoxyribodipyrimidine photo-lyase
17 Sobic.002G347600 pentatricopeptide containing protein, putative, expressed -
18 Sobic.006G173600 serine racemase, putative, expressed K12235: serine racemase
19 Sobic.001G333500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
20 Sobic.007G225500 expressed protein -


Gene co-expression network
sample Sobic003G402000 Sobic003G402000 Sobic001G020100 Sobic001G020100 Sobic003G402000--Sobic001G020100 Sobic004G268000 Sobic004G268000 Sobic003G402000--Sobic004G268000 Sobic008G091400 Sobic008G091400 Sobic003G402000--Sobic008G091400 SobicK031800 SobicK031800 Sobic003G402000--SobicK031800 Sobic009G140800 Sobic009G140800 Sobic003G402000--Sobic009G140800 Sobic009G063100 Sobic009G063100 Sobic003G402000--Sobic009G063100 Sobic008G188600 Sobic008G188600 Sobic003G402000--Sobic008G188600 Sobic007G181400 Sobic007G181400 Sobic003G402000--Sobic007G181400 Sobic007G136200 Sobic007G136200 Sobic003G402000--Sobic007G136200 Sobic001G491000 Sobic001G491000 Sobic001G020100--Sobic001G491000 Sobic003G370000 Sobic003G370000 Sobic001G020100--Sobic003G370000 Sobic001G289500 Sobic001G289500 Sobic001G020100--Sobic001G289500 Sobic007G161500 Sobic007G161500 Sobic001G020100--Sobic007G161500 Sobic006G130300 Sobic006G130300 Sobic001G020100--Sobic006G130300 Sobic005G056400 Sobic005G056400 Sobic001G020100--Sobic005G056400 Sobic001G076900 Sobic001G076900 Sobic001G020100--Sobic001G076900 Sobic006G238200 Sobic006G238200 Sobic001G020100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic001G020100--Sobic001G100000 Sobic004G305800 Sobic004G305800 Sobic004G268000--Sobic004G305800 Sobic009G129300 Sobic009G129300 Sobic004G268000--Sobic009G129300 Sobic004G268000--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic004G268000--Sobic002G275300 Sobic010G201700 Sobic010G201700 Sobic004G268000--Sobic010G201700 Sobic004G268000--Sobic001G020100 Sobic004G268000--Sobic006G238200 Sobic002G370600 Sobic002G370600 Sobic004G268000--Sobic002G370600 Sobic010G181300 Sobic010G181300 Sobic004G268000--Sobic010G181300 Sobic002G347600 Sobic002G347600 Sobic008G091400--Sobic002G347600 Sobic010G035400 Sobic010G035400 Sobic008G091400--Sobic010G035400 Sobic008G091400--Sobic007G136200 Sobic002G220900 Sobic002G220900 Sobic008G091400--Sobic002G220900 Sobic008G091400--SobicK031800 Sobic004G337400 Sobic004G337400 Sobic008G091400--Sobic004G337400 Sobic006G077400 Sobic006G077400 Sobic008G091400--Sobic006G077400 Sobic007G225500 Sobic007G225500 Sobic008G091400--Sobic007G225500 Sobic005G073200 Sobic005G073200 Sobic008G091400--Sobic005G073200 Sobic003G219200 Sobic003G219200 SobicK031800--Sobic003G219200 SobicK031800--Sobic008G188600 Sobic003G387100 Sobic003G387100 SobicK031800--Sobic003G387100 Sobic009G175500 Sobic009G175500 SobicK031800--Sobic009G175500 Sobic005G149400 Sobic005G149400 SobicK031800--Sobic005G149400 Sobic004G336200 Sobic004G336200 SobicK031800--Sobic004G336200 SobicK031800--Sobic010G035400 SobicK031800--Sobic002G275300 Sobic006G102000 Sobic006G102000 SobicK031800--Sobic006G102000 Sobic003G234200 Sobic003G234200 Sobic009G140800--Sobic003G234200 Sobic001G329400 Sobic001G329400 Sobic009G140800--Sobic001G329400 Sobic009G140800--Sobic004G268000 Sobic004G125700 Sobic004G125700 Sobic009G140800--Sobic004G125700 Sobic004G238600 Sobic004G238600 Sobic009G140800--Sobic004G238600 Sobic005G110502 Sobic005G110502 Sobic009G140800--Sobic005G110502 Sobic003G431900 Sobic003G431900 Sobic009G140800--Sobic003G431900 Sobic009G140800--Sobic009G129300 Sobic009G140800--Sobic007G161500 Sobic010G023700 Sobic010G023700 Sobic009G063100--Sobic010G023700 Sobic007G140800 Sobic007G140800 Sobic009G063100--Sobic007G140800 Sobic001G129000 Sobic001G129000 Sobic009G063100--Sobic001G129000 Sobic010G188600 Sobic010G188600 Sobic009G063100--Sobic010G188600 Sobic004G274100 Sobic004G274100 Sobic009G063100--Sobic004G274100 Sobic006G207800 Sobic006G207800 Sobic009G063100--Sobic006G207800 Sobic007G029700 Sobic007G029700 Sobic009G063100--Sobic007G029700 Sobic001G102800 Sobic001G102800 Sobic009G063100--Sobic001G102800 Sobic009G237100 Sobic009G237100 Sobic009G063100--Sobic009G237100 Sobic008G188600--Sobic003G387100 Sobic009G043000 Sobic009G043000 Sobic008G188600--Sobic009G043000 Sobic008G102000 Sobic008G102000 Sobic008G188600--Sobic008G102000 Sobic008G188600--Sobic006G207800 Sobic009G059300 Sobic009G059300 Sobic008G188600--Sobic009G059300 Sobic006G067400 Sobic006G067400 Sobic008G188600--Sobic006G067400 Sobic008G188600--Sobic010G201700 Sobic010G153900 Sobic010G153900 Sobic008G188600--Sobic010G153900 Sobic008G188600--Sobic007G225500 Sobic001G015200 Sobic001G015200 Sobic007G181400--Sobic001G015200 Sobic003G419900 Sobic003G419900 Sobic007G181400--Sobic003G419900 Sobic004G359600 Sobic004G359600 Sobic007G181400--Sobic004G359600 Sobic004G202200 Sobic004G202200 Sobic007G181400--Sobic004G202200 Sobic007G181400--Sobic002G275300 Sobic007G181400--Sobic001G289500 Sobic007G181400--Sobic001G491000 Sobic007G181400--Sobic006G238200 Sobic008G088821 Sobic008G088821 Sobic007G181400--Sobic008G088821 Sobic006G158100 Sobic006G158100 Sobic007G136200--Sobic006G158100 Sobic010G043800 Sobic010G043800 Sobic007G136200--Sobic010G043800 Sobic001G504400 Sobic001G504400 Sobic007G136200--Sobic001G504400 Sobic010G002700 Sobic010G002700 Sobic007G136200--Sobic010G002700 Sobic007G103400 Sobic007G103400 Sobic007G136200--Sobic007G103400 Sobic001G169900 Sobic001G169900 Sobic007G136200--Sobic001G169900 Sobic007G136200--Sobic004G337400 Sobic007G108900 Sobic007G108900 Sobic007G136200--Sobic007G108900 Sobic001G378100 Sobic001G378100 Sobic007G136200--Sobic001G378100
Octagon: transcription factors


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