Gene annotation
Transcriptome id Sobic.003G219200.1
Synonym MEE18, Sb03g027800
Functional annotation MEE18, putative, expressed
UniProt C5XR06
Pfam PF01933
Panther DB PTHR31240
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G34090 : maternal effect embryo arrest 18
RAP-DB (Rice) LOC_Os01g42800.1 : MEE18, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK08711 , KQK08710 , KQK08712 , KQK08709
Barley HORVU3Hr1G053910.7 , HORVU3Hr1G053910.6 , HORVU3Hr1G053910.5 , HORVU3Hr1G053910.4 , HORVU3Hr1G053910.3 , HORVU3Hr1G053910.2 , HORVU3Hr1G053910.1 , HORVU3Hr1G053910.9 , HORVU3Hr1G053910.8 , HORVU3Hr1G053910.12 , HORVU3Hr1G053910.11 , HORVU3Hr1G053910.10
Wheat TraesCS3D02G232400 , TraesCS3D02G232400 , TraesCS3B02G250600 , TraesCS3A02G220300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.K031800 inositol-1-monophosphatase, putative, expressed K01082: cysQ, MET22, 3'(2'), 5'-bisphosphate nucleotidase
2 Sobic.010G035400 expressed protein -
3 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
4 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
5 Sobic.009G237100 -(PubMedID : 26976818)@bile acid sodium symporter, putative, expressed K14347: SLC10A7, solute carrier family 10 (sodium/bile acid cotransporter), member 7
6 Sobic.007G103400 expressed protein -
7 Sobic.009G237000 OsDegp9 - Putative Deg protease homologue, expressed -
8 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
9 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
10 Sobic.009G175500 acetyltransferase, GNAT family, putative, expressed -
11 Sobic.004G336200 OsClp6 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.007G108900 APE1, putative, expressed -
14 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
15 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
16 Sobic.005G204200 peptide chain release factor protein, putative, expressed K02835: prfA, MTRF1, peptide chain release factor 1
17 Sobic.002G220900 expressed protein -
18 Sobic.007G225500 expressed protein -
19 Sobic.003G387100 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed K03969: phage shock protein A
20 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -


Gene co-expression network
sample Sobic003G219200 Sobic003G219200 SobicK031800 SobicK031800 Sobic003G219200--SobicK031800 Sobic010G035400 Sobic010G035400 Sobic003G219200--Sobic010G035400 Sobic002G275300 Sobic002G275300 Sobic003G219200--Sobic002G275300 Sobic006G102000 Sobic006G102000 Sobic003G219200--Sobic006G102000 Sobic009G237100 Sobic009G237100 Sobic003G219200--Sobic009G237100 Sobic007G103400 Sobic007G103400 Sobic003G219200--Sobic007G103400 Sobic009G237000 Sobic009G237000 Sobic003G219200--Sobic009G237000 Sobic006G207800 Sobic006G207800 Sobic003G219200--Sobic006G207800 Sobic001G100000 Sobic001G100000 Sobic003G219200--Sobic001G100000 SobicK031800--Sobic003G219200 Sobic008G188600 Sobic008G188600 SobicK031800--Sobic008G188600 Sobic003G387100 Sobic003G387100 SobicK031800--Sobic003G387100 Sobic009G175500 Sobic009G175500 SobicK031800--Sobic009G175500 Sobic005G149400 Sobic005G149400 SobicK031800--Sobic005G149400 Sobic004G336200 Sobic004G336200 SobicK031800--Sobic004G336200 SobicK031800--Sobic010G035400 SobicK031800--Sobic002G275300 SobicK031800--Sobic006G102000 Sobic010G035400--Sobic007G103400 Sobic007G225500 Sobic007G225500 Sobic010G035400--Sobic007G225500 Sobic010G035400--Sobic004G336200 Sobic004G353100 Sobic004G353100 Sobic010G035400--Sobic004G353100 Sobic010G035400--Sobic009G237000 Sobic010G035400--Sobic002G275300 Sobic003G160800 Sobic003G160800 Sobic010G035400--Sobic003G160800 Sobic010G035400--Sobic006G207800 Sobic010G035400--Sobic003G387100 Sobic006G238200 Sobic006G238200 Sobic002G275300--Sobic006G238200 Sobic010G181300 Sobic010G181300 Sobic002G275300--Sobic010G181300 Sobic001G491000 Sobic001G491000 Sobic002G275300--Sobic001G491000 Sobic002G298800 Sobic002G298800 Sobic002G275300--Sobic002G298800 Sobic007G108900 Sobic007G108900 Sobic002G275300--Sobic007G108900 Sobic002G275300--Sobic007G225500 Sobic002G275300--Sobic007G103400 Sobic002G275300--Sobic010G035400 Sobic003G306200 Sobic003G306200 Sobic002G275300--Sobic003G306200 Sobic006G102000--Sobic007G108900 Sobic006G102000--Sobic009G237000 Sobic001G289500 Sobic001G289500 Sobic006G102000--Sobic001G289500 Sobic003G094100 Sobic003G094100 Sobic006G102000--Sobic003G094100 Sobic006G102000--Sobic010G181300 Sobic006G102000--Sobic002G275300 Sobic006G102000--Sobic001G491000 Sobic006G102000--Sobic006G207800 Sobic004G303200 Sobic004G303200 Sobic006G102000--Sobic004G303200 Sobic007G009200 Sobic007G009200 Sobic009G237100--Sobic007G009200 Sobic009G237100--Sobic006G207800 Sobic009G237100--Sobic006G238200 Sobic009G237100--Sobic001G100000 Sobic009G237100--Sobic001G491000 Sobic009G237100--Sobic002G275300 Sobic009G237100--Sobic010G035400 Sobic001G102800 Sobic001G102800 Sobic009G237100--Sobic001G102800 Sobic009G237100--Sobic010G181300 Sobic007G103400--Sobic009G237000 Sobic007G103400--Sobic002G298800 Sobic007G103400--Sobic004G353100 Sobic007G103400--Sobic010G035400 Sobic001G504400 Sobic001G504400 Sobic007G103400--Sobic001G504400 Sobic007G103400--Sobic003G306200 Sobic002G198300 Sobic002G198300 Sobic007G103400--Sobic002G198300 Sobic003G233700 Sobic003G233700 Sobic007G103400--Sobic003G233700 Sobic007G103400--Sobic002G275300 Sobic009G237000--Sobic007G103400 Sobic009G237000--Sobic004G353100 Sobic009G237000--Sobic006G102000 Sobic009G237000--Sobic002G298800 Sobic009G237000--Sobic010G035400 Sobic009G237000--Sobic001G504400 Sobic009G237000--Sobic003G233700 Sobic009G237000--Sobic007G108900 Sobic008G074000 Sobic008G074000 Sobic009G237000--Sobic008G074000 Sobic006G207800--Sobic001G102800 Sobic006G207800--Sobic009G237100 Sobic006G207800--Sobic007G009200 Sobic006G207800--Sobic003G387100 Sobic009G043000 Sobic009G043000 Sobic006G207800--Sobic009G043000 Sobic006G207800--Sobic010G035400 Sobic003G431700 Sobic003G431700 Sobic006G207800--Sobic003G431700 Sobic010G201700 Sobic010G201700 Sobic006G207800--Sobic010G201700 Sobic006G207800--Sobic006G238200 Sobic001G100000--Sobic001G491000 Sobic001G100000--Sobic006G238200 Sobic001G100000--Sobic009G237100 Sobic001G100000--Sobic002G275300 Sobic001G100000--Sobic006G207800 Sobic001G100000--Sobic010G201700 Sobic001G100000--Sobic010G181300 Sobic001G100000--Sobic001G289500 Sobic004G272100 Sobic004G272100 Sobic001G100000--Sobic004G272100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.