Gene annotation
Transcriptome id Sobic.001G475300.1
Synonym Sb01g044530, UBP3, ATUBP3
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt C5WUT7
Pfam PF00443
Panther DB PTHR24006 PTHR24006:SF469
NCBI CDD KOG1870; Ubiquitin C-terminal hydrolase
KEGG Orthology K11842; ubiquitin carboxyl-terminal hydrolase 12/46
Gene Ontology GO:0016579; protein deubiquitination


Orthologs (automatic annotation)
TAIR AT4G39910 : ubiquitin-specific protease 3
RAP-DB (Rice) LOC_Os03g09080.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020786 , Zm00025a056180 , Zm00025a001038 , Zm00025a011157
Brachypodium KQJ82912 , KQK23193 , KQK00002
Barley HORVU4Hr1G078590.7 , HORVU4Hr1G078590.6 , HORVU4Hr1G078590.5 , HORVU4Hr1G078590.4 , HORVU4Hr1G078590.3 , HORVU4Hr1G078590.2 , HORVU4Hr1G078590.1 , HORVU4Hr1G078590.9 , HORVU4Hr1G078590.8
Wheat TraesCS4A02G406600 , TraesCS6D02G187000 , TraesCS7D02G125700 , TraesCS4B02G306100 , TraesCS4B02G306100 , TraesCS7D02G125700 , TraesCS6A02G203500 , TraesCS4D02G304300 , TraesCS6B02G223900 , TraesCS4B02G306100 , TraesCS2A02G340100
Populus -


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cDNA sequences
Sobic.001G475300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G250400 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
3 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
4 Sobic.003G117800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
5 Sobic.007G172700 ECT5, putative, expressed -
6 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
7 Sobic.003G058500 expressed protein -
8 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
9 Sobic.004G302800 MSP domain containing protein, expressed -
10 Sobic.001G424800 myosin heavy chain-related, putative, expressed -
11 Sobic.009G162100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
12 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
13 Sobic.010G213500 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
14 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
15 Sobic.003G428000 expressed protein -
16 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
17 Sobic.001G057400 expressed protein -
18 Sobic.004G004100 nucleic acid binding protein, putative, expressed -
19 Sobic.003G198900 protein phosphatase 2C, putative, expressed -
20 Sobic.003G190200 Sec1 family transport protein, putative, expressed -


Gene co-expression network
sample Sobic001G475300 Sobic001G475300 Sobic003G250400 Sobic003G250400 Sobic001G475300--Sobic003G250400 Sobic010G181600 Sobic010G181600 Sobic001G475300--Sobic010G181600 Sobic001G141400 Sobic001G141400 Sobic001G475300--Sobic001G141400 Sobic003G117800 Sobic003G117800 Sobic001G475300--Sobic003G117800 Sobic007G172700 Sobic007G172700 Sobic001G475300--Sobic007G172700 Sobic002G355800 Sobic002G355800 Sobic001G475300--Sobic002G355800 Sobic003G058500 Sobic003G058500 Sobic001G475300--Sobic003G058500 Sobic008G152700 Sobic008G152700 Sobic001G475300--Sobic008G152700 Sobic004G302800 Sobic004G302800 Sobic001G475300--Sobic004G302800 Sobic003G250400--Sobic001G475300 Sobic003G198900 Sobic003G198900 Sobic003G250400--Sobic003G198900 Sobic001G257800 Sobic001G257800 Sobic003G250400--Sobic001G257800 Sobic003G428000 Sobic003G428000 Sobic003G250400--Sobic003G428000 Sobic004G082800 Sobic004G082800 Sobic003G250400--Sobic004G082800 Sobic010G024400 Sobic010G024400 Sobic003G250400--Sobic010G024400 Sobic003G250400--Sobic010G181600 Sobic003G250400--Sobic003G117800 Sobic003G250400--Sobic001G141400 Sobic010G181600--Sobic003G058500 Sobic001G424800 Sobic001G424800 Sobic010G181600--Sobic001G424800 Sobic010G181600--Sobic003G117800 Sobic010G181600--Sobic001G475300 Sobic008G006000 Sobic008G006000 Sobic010G181600--Sobic008G006000 Sobic003G353700 Sobic003G353700 Sobic010G181600--Sobic003G353700 Sobic007G218600 Sobic007G218600 Sobic010G181600--Sobic007G218600 Sobic004G004100 Sobic004G004100 Sobic010G181600--Sobic004G004100 Sobic010G181600--Sobic003G250400 Sobic001G141400--Sobic001G475300 Sobic009G252300 Sobic009G252300 Sobic001G141400--Sobic009G252300 Sobic001G141400--Sobic003G250400 Sobic009G194000 Sobic009G194000 Sobic001G141400--Sobic009G194000 Sobic003G190200 Sobic003G190200 Sobic001G141400--Sobic003G190200 Sobic001G141400--Sobic007G172700 Sobic001G490900 Sobic001G490900 Sobic001G141400--Sobic001G490900 Sobic002G200000 Sobic002G200000 Sobic001G141400--Sobic002G200000 Sobic003G039900 Sobic003G039900 Sobic001G141400--Sobic003G039900 Sobic003G117800--Sobic001G424800 Sobic003G385300 Sobic003G385300 Sobic003G117800--Sobic003G385300 Sobic003G394500 Sobic003G394500 Sobic003G117800--Sobic003G394500 Sobic001G057400 Sobic001G057400 Sobic003G117800--Sobic001G057400 Sobic003G117800--Sobic008G152700 Sobic001G149000 Sobic001G149000 Sobic003G117800--Sobic001G149000 Sobic001G356200 Sobic001G356200 Sobic003G117800--Sobic001G356200 Sobic001G385000 Sobic001G385000 Sobic003G117800--Sobic001G385000 Sobic009G046900 Sobic009G046900 Sobic003G117800--Sobic009G046900 Sobic006G060000 Sobic006G060000 Sobic007G172700--Sobic006G060000 Sobic004G350700 Sobic004G350700 Sobic007G172700--Sobic004G350700 Sobic007G172700--Sobic008G152700 Sobic007G172700--Sobic003G190200 Sobic007G172700--Sobic003G394500 Sobic007G172700--Sobic003G058500 Sobic007G172700--Sobic002G355800 Sobic007G172700--Sobic001G424800 Sobic007G030100 Sobic007G030100 Sobic007G172700--Sobic007G030100 Sobic010G169900 Sobic010G169900 Sobic002G355800--Sobic010G169900 Sobic002G355800--Sobic007G172700 Sobic006G128100 Sobic006G128100 Sobic002G355800--Sobic006G128100 Sobic010G213500 Sobic010G213500 Sobic002G355800--Sobic010G213500 Sobic001G389200 Sobic001G389200 Sobic002G355800--Sobic001G389200 Sobic002G355800--Sobic001G475300 Sobic002G355800--Sobic003G058500 Sobic009G162100 Sobic009G162100 Sobic002G355800--Sobic009G162100 Sobic005G177700 Sobic005G177700 Sobic002G355800--Sobic005G177700 Sobic003G058500--Sobic001G424800 Sobic003G058500--Sobic010G181600 Sobic003G058500--Sobic007G172700 Sobic001G047600 Sobic001G047600 Sobic003G058500--Sobic001G047600 Sobic003G058500--Sobic004G350700 Sobic003G058500--Sobic002G355800 Sobic001G378800 Sobic001G378800 Sobic003G058500--Sobic001G378800 Sobic003G058500--Sobic008G152700 Sobic003G058500--Sobic003G117800 Sobic008G152700--Sobic001G149000 Sobic008G152700--Sobic003G385300 Sobic008G152700--Sobic003G117800 Sobic004G077300 Sobic004G077300 Sobic008G152700--Sobic004G077300 Sobic008G152700--Sobic009G046900 Sobic008G152700--Sobic007G172700 Sobic008G152700--Sobic003G428000 Sobic008G152700--Sobic003G394500 Sobic008G152700--Sobic001G385000 Sobic004G302800--Sobic003G198900 Sobic004G302800--Sobic003G250400 Sobic004G302800--Sobic001G475300 Sobic004G213300 Sobic004G213300 Sobic004G302800--Sobic004G213300 Sobic004G302800--Sobic001G257800 Sobic003G402800 Sobic003G402800 Sobic004G302800--Sobic003G402800 Sobic003G405600 Sobic003G405600 Sobic004G302800--Sobic003G405600 Sobic008G055500 Sobic008G055500 Sobic004G302800--Sobic008G055500 Sobic004G302800--Sobic001G141400
Octagon: transcription factors


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