Gene annotation
Transcriptome id Sobic.010G185100.3,Sobic.010G185100.2
Synonym Sb10g023580
Functional annotation RNA polymerase Rpc34 subunit family protein, expressed
UniProt C5Z5N2
Pfam PF05158
Panther DB PTHR12780 PTHR12780:SF1
NCBI CDD KOG3233; RNA polymerase III, subunit C34
KEGG Orthology K03025; RPC6, DNA-directed RNA polymerase III subunit RPC6
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G23710 : DNA binding;DNA-directed RNA polymerases
RAP-DB (Rice) LOC_Os06g40110.1 : RNA polymerase Rpc34 subunit family protein, expressed
MaizeGDB (Corn) Zm00025a042229 , Zm00025a051280
Brachypodium KQK17767
Barley -
Wheat TraesCS7A02G376000 , TraesCS7A02G376100
Populus -


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cDNA sequences
Sobic.010G185100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
2 Sobic.009G187600 methyltransferase domain containing protein, expressed -
3 Sobic.001G347700 protein phosphotase protein, putative, expressed -
4 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
5 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
6 Sobic.001G402600 expressed protein -
7 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
8 Sobic.004G353500 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
9 Sobic.007G036800 xylosyltransferase, putative, expressed -
10 Sobic.009G125000 cyclin-dependent kinase C-1, putative, expressed K08819: cyclin-dependent kinase 12/13
11 Sobic.009G182200 domain of unknown function, DUF250 domain containing protein, expressed -
12 Sobic.009G255900 "Expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@similar to Putative uncharacterized protein(PubMedID : 29862293)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
13 Sobic.009G086200 ubiquitin-conjugating enzyme E2 O, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
14 Sobic.007G201000 methyltransferase domain containing protein, expressed -
15 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13
16 Sobic.008G108500 histone deacetylase 6, putative, expressed -
17 Sobic.001G286100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
18 Sobic.001G013200 actin-related protein 2/3 complex subunit 4, putative, expressed K05755: actin related protein 2/3 complex, subunit 4
19 Sobic.004G186300 protein phosphotase protein, putative, expressed -
20 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic010G185100 Sobic010G185100 Sobic007G192100 Sobic007G192100 Sobic010G185100--Sobic007G192100 Sobic009G187600 Sobic009G187600 Sobic010G185100--Sobic009G187600 Sobic001G347700 Sobic001G347700 Sobic010G185100--Sobic001G347700 Sobic002G267400 Sobic002G267400 Sobic010G185100--Sobic002G267400 Sobic002G401700 Sobic002G401700 Sobic010G185100--Sobic002G401700 Sobic001G402600 Sobic001G402600 Sobic010G185100--Sobic001G402600 Sobic007G117800 Sobic007G117800 Sobic010G185100--Sobic007G117800 Sobic004G353500 Sobic004G353500 Sobic010G185100--Sobic004G353500 Sobic007G036800 Sobic007G036800 Sobic010G185100--Sobic007G036800 Sobic008G108500 Sobic008G108500 Sobic007G192100--Sobic008G108500 Sobic001G036700 Sobic001G036700 Sobic007G192100--Sobic001G036700 Sobic007G192100--Sobic001G402600 Sobic002G176400 Sobic002G176400 Sobic007G192100--Sobic002G176400 Sobic001G126200 Sobic001G126200 Sobic007G192100--Sobic001G126200 Sobic007G038800 Sobic007G038800 Sobic007G192100--Sobic007G038800 Sobic001G392800 Sobic001G392800 Sobic007G192100--Sobic001G392800 Sobic002G399500 Sobic002G399500 Sobic007G192100--Sobic002G399500 Sobic007G192100--Sobic007G117800 Sobic006G094500 Sobic006G094500 Sobic009G187600--Sobic006G094500 Sobic003G348200 Sobic003G348200 Sobic009G187600--Sobic003G348200 Sobic009G187600--Sobic010G185100 Sobic009G218000 Sobic009G218000 Sobic009G187600--Sobic009G218000 Sobic007G010200 Sobic007G010200 Sobic009G187600--Sobic007G010200 Sobic001G188700 Sobic001G188700 Sobic009G187600--Sobic001G188700 Sobic002G422400 Sobic002G422400 Sobic009G187600--Sobic002G422400 Sobic007G031100 Sobic007G031100 Sobic009G187600--Sobic007G031100 Sobic005G044100 Sobic005G044100 Sobic009G187600--Sobic005G044100 Sobic007G048700 Sobic007G048700 Sobic001G347700--Sobic007G048700 Sobic003G167000 Sobic003G167000 Sobic001G347700--Sobic003G167000 Sobic001G352800 Sobic001G352800 Sobic001G347700--Sobic001G352800 Sobic001G485300 Sobic001G485300 Sobic001G347700--Sobic001G485300 Sobic003G260600 Sobic003G260600 Sobic001G347700--Sobic003G260600 Sobic010G028400 Sobic010G028400 Sobic001G347700--Sobic010G028400 Sobic002G352200 Sobic002G352200 Sobic001G347700--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic001G347700--Sobic002G217500 Sobic004G040700 Sobic004G040700 Sobic001G347700--Sobic004G040700 Sobic003G148900 Sobic003G148900 Sobic002G267400--Sobic003G148900 Sobic002G059000 Sobic002G059000 Sobic002G267400--Sobic002G059000 Sobic002G357900 Sobic002G357900 Sobic002G267400--Sobic002G357900 Sobic002G267400--Sobic007G192100 Sobic002G267400--Sobic001G036700 Sobic008G111800 Sobic008G111800 Sobic002G267400--Sobic008G111800 Sobic003G062400 Sobic003G062400 Sobic002G267400--Sobic003G062400 Sobic004G256300 Sobic004G256300 Sobic002G267400--Sobic004G256300 Sobic007G081900 Sobic007G081900 Sobic002G267400--Sobic007G081900 Sobic010G007400 Sobic010G007400 Sobic002G401700--Sobic010G007400 Sobic007G012900 Sobic007G012900 Sobic002G401700--Sobic007G012900 Sobic004G159000 Sobic004G159000 Sobic002G401700--Sobic004G159000 Sobic002G401700--Sobic007G117800 Sobic001G050400 Sobic001G050400 Sobic002G401700--Sobic001G050400 Sobic003G116600 Sobic003G116600 Sobic002G401700--Sobic003G116600 Sobic002G401700--Sobic008G108500 Sobic002G276800 Sobic002G276800 Sobic002G401700--Sobic002G276800 Sobic001G378200 Sobic001G378200 Sobic002G401700--Sobic001G378200 Sobic004G242100 Sobic004G242100 Sobic001G402600--Sobic004G242100 Sobic001G402600--Sobic007G192100 Sobic001G402600--Sobic001G126200 Sobic007G092100 Sobic007G092100 Sobic001G402600--Sobic007G092100 Sobic003G358300 Sobic003G358300 Sobic001G402600--Sobic003G358300 Sobic006G143500 Sobic006G143500 Sobic001G402600--Sobic006G143500 Sobic001G285300 Sobic001G285300 Sobic001G402600--Sobic001G285300 Sobic003G224300 Sobic003G224300 Sobic001G402600--Sobic003G224300 Sobic007G073600 Sobic007G073600 Sobic001G402600--Sobic007G073600 Sobic007G117800--Sobic003G148900 Sobic001G443200 Sobic001G443200 Sobic007G117800--Sobic001G443200 Sobic007G117800--Sobic002G401700 Sobic003G276100 Sobic003G276100 Sobic007G117800--Sobic003G276100 Sobic007G117800--Sobic007G012900 Sobic005G184200 Sobic005G184200 Sobic007G117800--Sobic005G184200 Sobic007G117800--Sobic004G159000 Sobic003G200600 Sobic003G200600 Sobic007G117800--Sobic003G200600 Sobic002G262200 Sobic002G262200 Sobic007G117800--Sobic002G262200 Sobic003G294900 Sobic003G294900 Sobic004G353500--Sobic003G294900 Sobic008G118300 Sobic008G118300 Sobic004G353500--Sobic008G118300 Sobic005G044300 Sobic005G044300 Sobic004G353500--Sobic005G044300 Sobic004G353500--Sobic007G012900 Sobic004G160800 Sobic004G160800 Sobic004G353500--Sobic004G160800 Sobic001G286100 Sobic001G286100 Sobic004G353500--Sobic001G286100 Sobic002G037600 Sobic002G037600 Sobic004G353500--Sobic002G037600 Sobic001G203800 Sobic001G203800 Sobic004G353500--Sobic001G203800 Sobic002G186500 Sobic002G186500 Sobic004G353500--Sobic002G186500 Sobic004G129500 Sobic004G129500 Sobic007G036800--Sobic004G129500 Sobic010G103500 Sobic010G103500 Sobic007G036800--Sobic010G103500 Sobic004G145600 Sobic004G145600 Sobic007G036800--Sobic004G145600 Sobic008G112100 Sobic008G112100 Sobic007G036800--Sobic008G112100 Sobic010G059700 Sobic010G059700 Sobic007G036800--Sobic010G059700 Sobic007G036800--Sobic007G010200 Sobic004G350200 Sobic004G350200 Sobic007G036800--Sobic004G350200 Sobic002G123600 Sobic002G123600 Sobic007G036800--Sobic002G123600 Sobic007G036800--Sobic004G256300
Octagon: transcription factors


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