Gene annotation
Transcriptome id Sobic.009G255900.1
Synonym Sb09g030600, HAB2
Functional annotation "Expressed in 4 stresses, namely drought, salt, cold and heat" (PubMedID : 29862293)
similar to Putative uncharacterized protein (PubMedID : 29862293)
protein phosphatase 2C, putative, expressed
UniProt A0A1B6PAM8
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF312
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K14497; protein phosphatase 2C
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT1G17550 : homology to ABI2
RAP-DB (Rice) LOC_Os05g51510.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a044747 , Zm00025a036780
Brachypodium -
Barley HORVU0Hr1G001600.1 , HORVU1Hr1G094840.8 , HORVU1Hr1G094840.9 , HORVU1Hr1G094840.3 , HORVU1Hr1G094840.1 , HORVU1Hr1G094840.6 , HORVU1Hr1G094840.7 , HORVU1Hr1G094840.4 , HORVU1Hr1G094840.5 , HORVU1Hr1G094840.10
Wheat TraesCS1D02G449700 , TraesCS1B02G475700 , TraesCS1A02G441200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G164000 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
2 Sobic.003G131300 glycosyl hydrolases family 17 protein, putative, expressed -
3 Sobic.001G013200 actin-related protein 2/3 complex subunit 4, putative, expressed K05755: actin related protein 2/3 complex, subunit 4
4 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
5 Sobic.007G019501 - K13448: calcium-binding protein CML
6 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
7 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
8 Sobic.001G347700 protein phosphotase protein, putative, expressed -
9 Sobic.003G167000 protein phosphotase protein, putative, expressed -
10 Sobic.007G048700 stomatin-like protein 2, putative, expressed -
11 Sobic.001G286100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
12 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
13 Sobic.010G185100 RNA polymerase Rpc34 subunit family protein, expressed K03025: RPC6, DNA-directed RNA polymerase III subunit RPC6
14 Sobic.009G206600 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
15 Sobic.008G025700 cytochrome P450 51, putative, expressed K05917: sterol 14alpha-demethylase
16 Sobic.007G191600 exosome complex exonuclease, putative, expressed K12586: RRP43, EXOSC8, exosome complex component RRP43
17 Sobic.004G031800 expressed protein -
18 Sobic.008G176800 expressed protein -
19 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
20 Sobic.002G387800 - K12456: anaphase-promoting complex subunit 13


Gene co-expression network
sample Sobic009G255900 Sobic009G255900 Sobic004G164000 Sobic004G164000 Sobic009G255900--Sobic004G164000 Sobic003G131300 Sobic003G131300 Sobic009G255900--Sobic003G131300 Sobic001G013200 Sobic001G013200 Sobic009G255900--Sobic001G013200 Sobic004G159000 Sobic004G159000 Sobic009G255900--Sobic004G159000 Sobic007G019501 Sobic007G019501 Sobic009G255900--Sobic007G019501 Sobic004G344800 Sobic004G344800 Sobic009G255900--Sobic004G344800 Sobic007G192100 Sobic007G192100 Sobic009G255900--Sobic007G192100 Sobic001G347700 Sobic001G347700 Sobic009G255900--Sobic001G347700 Sobic003G167000 Sobic003G167000 Sobic009G255900--Sobic003G167000 Sobic004G164000--Sobic003G131300 Sobic004G164000--Sobic007G019501 Sobic009G001900 Sobic009G001900 Sobic004G164000--Sobic009G001900 Sobic004G164000--Sobic004G159000 Sobic002G090700 Sobic002G090700 Sobic004G164000--Sobic002G090700 Sobic001G392800 Sobic001G392800 Sobic004G164000--Sobic001G392800 Sobic001G309500 Sobic001G309500 Sobic004G164000--Sobic001G309500 Sobic008G136800 Sobic008G136800 Sobic004G164000--Sobic008G136800 Sobic008G025700 Sobic008G025700 Sobic004G164000--Sobic008G025700 Sobic003G131300--Sobic004G164000 Sobic010G197900 Sobic010G197900 Sobic003G131300--Sobic010G197900 Sobic006G094600 Sobic006G094600 Sobic003G131300--Sobic006G094600 Sobic001G126200 Sobic001G126200 Sobic003G131300--Sobic001G126200 Sobic001G035400 Sobic001G035400 Sobic003G131300--Sobic001G035400 Sobic003G131300--Sobic004G344800 Sobic001G036700 Sobic001G036700 Sobic003G131300--Sobic001G036700 Sobic003G131300--Sobic009G001900 Sobic003G131300--Sobic007G019501 Sobic001G013200--Sobic003G167000 Sobic007G048700 Sobic007G048700 Sobic001G013200--Sobic007G048700 Sobic001G013200--Sobic001G035400 Sobic008G014300 Sobic008G014300 Sobic001G013200--Sobic008G014300 Sobic006G203900 Sobic006G203900 Sobic001G013200--Sobic006G203900 Sobic009G112900 Sobic009G112900 Sobic001G013200--Sobic009G112900 Sobic001G013200--Sobic003G131300 Sobic001G013200--Sobic010G197900 Sobic007G003100 Sobic007G003100 Sobic001G013200--Sobic007G003100 Sobic007G013900 Sobic007G013900 Sobic004G159000--Sobic007G013900 Sobic004G159000--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic004G159000--Sobic002G262200 Sobic004G030000 Sobic004G030000 Sobic004G159000--Sobic004G030000 Sobic003G196600 Sobic003G196600 Sobic004G159000--Sobic003G196600 Sobic004G159000--Sobic002G090700 Sobic003G152900 Sobic003G152900 Sobic004G159000--Sobic003G152900 Sobic002G260200 Sobic002G260200 Sobic004G159000--Sobic002G260200 Sobic010G007400 Sobic010G007400 Sobic004G159000--Sobic010G007400 Sobic007G019501--Sobic004G164000 Sobic007G019501--Sobic004G159000 Sobic007G019501--Sobic002G260200 Sobic007G019501--Sobic001G392800 Sobic007G019501--Sobic003G131300 Sobic007G019501--Sobic009G001900 Sobic004G012800 Sobic004G012800 Sobic007G019501--Sobic004G012800 Sobic001G031800 Sobic001G031800 Sobic007G019501--Sobic001G031800 Sobic002G254650 Sobic002G254650 Sobic007G019501--Sobic002G254650 Sobic001G073600 Sobic001G073600 Sobic004G344800--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic004G344800--Sobic003G135600 Sobic004G344800--Sobic004G159000 Sobic004G344800--Sobic001G035400 Sobic009G191400 Sobic009G191400 Sobic004G344800--Sobic009G191400 Sobic004G344800--Sobic004G030000 Sobic004G344800--Sobic002G262200 Sobic002G396700 Sobic002G396700 Sobic004G344800--Sobic002G396700 Sobic001G031900 Sobic001G031900 Sobic004G344800--Sobic001G031900 Sobic008G108500 Sobic008G108500 Sobic007G192100--Sobic008G108500 Sobic007G192100--Sobic001G036700 Sobic001G402600 Sobic001G402600 Sobic007G192100--Sobic001G402600 Sobic002G176400 Sobic002G176400 Sobic007G192100--Sobic002G176400 Sobic007G192100--Sobic001G126200 Sobic007G038800 Sobic007G038800 Sobic007G192100--Sobic007G038800 Sobic007G192100--Sobic001G392800 Sobic002G399500 Sobic002G399500 Sobic007G192100--Sobic002G399500 Sobic007G117800 Sobic007G117800 Sobic007G192100--Sobic007G117800 Sobic001G347700--Sobic007G048700 Sobic001G347700--Sobic003G167000 Sobic001G352800 Sobic001G352800 Sobic001G347700--Sobic001G352800 Sobic001G485300 Sobic001G485300 Sobic001G347700--Sobic001G485300 Sobic003G260600 Sobic003G260600 Sobic001G347700--Sobic003G260600 Sobic010G028400 Sobic010G028400 Sobic001G347700--Sobic010G028400 Sobic002G352200 Sobic002G352200 Sobic001G347700--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic001G347700--Sobic002G217500 Sobic004G040700 Sobic004G040700 Sobic001G347700--Sobic004G040700 Sobic003G167000--Sobic007G048700 Sobic003G167000--Sobic001G347700 Sobic003G167000--Sobic001G013200 Sobic003G167000--Sobic007G003100 Sobic009G218000 Sobic009G218000 Sobic003G167000--Sobic009G218000 Sobic003G274200 Sobic003G274200 Sobic003G167000--Sobic003G274200 Sobic003G113400 Sobic003G113400 Sobic003G167000--Sobic003G113400 Sobic003G190600 Sobic003G190600 Sobic003G167000--Sobic003G190600 Sobic006G153200 Sobic006G153200 Sobic003G167000--Sobic006G153200
Octagon: transcription factors


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