Gene annotation
Transcriptome id Sobic.007G180000.1,Sobic.007G180000.2
Synonym Sb07g025090
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6PID0 , C5YH57
Pfam PF00076
Panther DB PTHR10501 PTHR10501:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding GO:0017069snRNA binding GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT1G21320 : nucleotide binding;nucleic acid binding
RAP-DB (Rice) LOC_Os08g43360.1,LOC_Os08g43360.3 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a034194
Brachypodium KQK11863
Barley HORVU7Hr1G056910.5 , HORVU7Hr1G056910.1 , HORVU7Hr1G056910.2
Wheat TraesCS7A02G270300 , TraesCS7B02G168600 , TraesCS7D02G270800
Populus -


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cDNA sequences
Sobic.007G180000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G123000 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
2 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
3 Sobic.002G058700 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
4 Sobic.001G119900 - K12858: DDX23, ATP-dependent RNA helicase DDX23/PRP28
5 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
6 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
7 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
8 Sobic.006G221400 expressed protein -
9 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
10 Sobic.004G077600 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
11 Sobic.006G087400 expressed protein -
12 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
13 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
14 Sobic.004G074300 phytoene dehydrogenase-like, putative, expressed K16750: biogenesis of lysosome-related organelles complex 1 subunit 2
15 Sobic.001G218800 expressed protein -
16 Sobic.004G136500 - -
17 Sobic.009G007700 expressed protein -
18 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
19 Sobic.003G285000 OsFBX85 - F-box domain containing protein, expressed -
20 Sobic.010G239800 hydrolase, NUDIX family, domain containing protein, expressed K12613: mRNA-decapping enzyme subunit 2


Gene co-expression network
sample Sobic007G180000 Sobic007G180000 Sobic003G123000 Sobic003G123000 Sobic007G180000--Sobic003G123000 Sobic003G058900 Sobic003G058900 Sobic007G180000--Sobic003G058900 Sobic002G058700 Sobic002G058700 Sobic007G180000--Sobic002G058700 Sobic001G119900 Sobic001G119900 Sobic007G180000--Sobic001G119900 Sobic003G122500 Sobic003G122500 Sobic007G180000--Sobic003G122500 Sobic004G117800 Sobic004G117800 Sobic007G180000--Sobic004G117800 Sobic010G171100 Sobic010G171100 Sobic007G180000--Sobic010G171100 Sobic006G221400 Sobic006G221400 Sobic007G180000--Sobic006G221400 Sobic004G095300 Sobic004G095300 Sobic007G180000--Sobic004G095300 Sobic003G123000--Sobic003G122500 Sobic003G123000--Sobic004G095300 Sobic001G222900 Sobic001G222900 Sobic003G123000--Sobic001G222900 Sobic003G123000--Sobic010G171100 Sobic002G280600 Sobic002G280600 Sobic003G123000--Sobic002G280600 Sobic004G246700 Sobic004G246700 Sobic003G123000--Sobic004G246700 Sobic001G218800 Sobic001G218800 Sobic003G123000--Sobic001G218800 Sobic008G165700 Sobic008G165700 Sobic003G123000--Sobic008G165700 Sobic001G473600 Sobic001G473600 Sobic003G123000--Sobic001G473600 Sobic001G099800 Sobic001G099800 Sobic003G058900--Sobic001G099800 Sobic003G058900--Sobic004G095300 Sobic003G058900--Sobic010G171100 Sobic003G058900--Sobic007G180000 Sobic008G125000 Sobic008G125000 Sobic003G058900--Sobic008G125000 Sobic003G058900--Sobic002G058700 Sobic003G058900--Sobic004G117800 Sobic001G144600 Sobic001G144600 Sobic003G058900--Sobic001G144600 Sobic001G335500 Sobic001G335500 Sobic003G058900--Sobic001G335500 Sobic009G101300 Sobic009G101300 Sobic002G058700--Sobic009G101300 Sobic001G096000 Sobic001G096000 Sobic002G058700--Sobic001G096000 Sobic007G013300 Sobic007G013300 Sobic002G058700--Sobic007G013300 Sobic001G431000 Sobic001G431000 Sobic002G058700--Sobic001G431000 Sobic002G058700--Sobic010G171100 Sobic001G003500 Sobic001G003500 Sobic002G058700--Sobic001G003500 Sobic002G071000 Sobic002G071000 Sobic002G058700--Sobic002G071000 Sobic002G058700--Sobic004G095300 Sobic002G058700--Sobic004G117800 Sobic001G119900--Sobic003G122500 Sobic010G228700 Sobic010G228700 Sobic001G119900--Sobic010G228700 Sobic004G235300 Sobic004G235300 Sobic001G119900--Sobic004G235300 Sobic008G051200 Sobic008G051200 Sobic001G119900--Sobic008G051200 Sobic002G083900 Sobic002G083900 Sobic001G119900--Sobic002G083900 Sobic009G155250 Sobic009G155250 Sobic001G119900--Sobic009G155250 Sobic010G085200 Sobic010G085200 Sobic001G119900--Sobic010G085200 Sobic001G251100 Sobic001G251100 Sobic001G119900--Sobic001G251100 Sobic002G052700 Sobic002G052700 Sobic001G119900--Sobic002G052700 Sobic007G084100 Sobic007G084100 Sobic003G122500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic003G122500--Sobic005G160400 Sobic003G122500--Sobic003G123000 Sobic001G241100 Sobic001G241100 Sobic003G122500--Sobic001G241100 Sobic003G122500--Sobic001G119900 Sobic003G122500--Sobic010G171100 Sobic002G047700 Sobic002G047700 Sobic003G122500--Sobic002G047700 Sobic006G199200 Sobic006G199200 Sobic003G122500--Sobic006G199200 Sobic004G257100 Sobic004G257100 Sobic003G122500--Sobic004G257100 Sobic006G170200 Sobic006G170200 Sobic004G117800--Sobic006G170200 Sobic008G051100 Sobic008G051100 Sobic004G117800--Sobic008G051100 Sobic009G029700 Sobic009G029700 Sobic004G117800--Sobic009G029700 Sobic001G280400 Sobic001G280400 Sobic004G117800--Sobic001G280400 Sobic004G136500 Sobic004G136500 Sobic004G117800--Sobic004G136500 Sobic001G008800 Sobic001G008800 Sobic004G117800--Sobic001G008800 Sobic001G132900 Sobic001G132900 Sobic004G117800--Sobic001G132900 Sobic004G117800--Sobic002G058700 Sobic004G117800--Sobic003G058900 Sobic010G171100--Sobic004G095300 Sobic010G171100--Sobic003G122500 Sobic010G171100--Sobic003G123000 Sobic010G171100--Sobic010G228700 Sobic005G220000 Sobic005G220000 Sobic010G171100--Sobic005G220000 Sobic010G171100--Sobic010G085200 Sobic001G088100 Sobic001G088100 Sobic010G171100--Sobic001G088100 Sobic010G171100--Sobic002G058700 Sobic010G171100--Sobic007G084100 Sobic010G032400 Sobic010G032400 Sobic006G221400--Sobic010G032400 Sobic006G221400--Sobic008G125000 Sobic001G444600 Sobic001G444600 Sobic006G221400--Sobic001G444600 Sobic008G017200 Sobic008G017200 Sobic006G221400--Sobic008G017200 Sobic003G158700 Sobic003G158700 Sobic006G221400--Sobic003G158700 Sobic006G221400--Sobic007G180000 Sobic006G221400--Sobic001G132900 Sobic004G047200 Sobic004G047200 Sobic006G221400--Sobic004G047200 Sobic010G269100 Sobic010G269100 Sobic006G221400--Sobic010G269100 Sobic004G095300--Sobic010G171100 Sobic004G095300--Sobic003G123000 Sobic004G095300--Sobic001G003500 Sobic002G092300 Sobic002G092300 Sobic004G095300--Sobic002G092300 Sobic004G095300--Sobic001G473600 Sobic004G095300--Sobic001G088100 Sobic004G095300--Sobic005G220000 Sobic004G095300--Sobic010G085200 Sobic002G180000 Sobic002G180000 Sobic004G095300--Sobic002G180000
Octagon: transcription factors


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