Gene annotation
Transcriptome id Sobic.009G083600.1
Synonym CML24, TCH2, Sb09g007360
Functional annotation OsCML18 - Calmodulin-related calcium sensor protein, expressed
UniProt C5YV44
Pfam PF13499
Panther DB PTHR10891 PTHR10891:SF530
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37770 : EF hand calcium-binding protein family
RAP-DB (Rice) LOC_Os05g13580.1 : OsCML18 - Calmodulin-related calcium sensor protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK06989 , PNT71604 , KQK06991 , KQK06990 , KQK06994
Barley HORVU1Hr1G029850.1 , HORVU1Hr1G029850.2
Wheat -
Populus -


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cDNA sequences
Sobic.009G083600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
2 Sobic.001G279400 - -
3 Sobic.004G352100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
4 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
5 Sobic.002G342800 GRAS family transcription factor domain containing protein, expressed -
6 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
7 Sobic.010G079800 expressed protein -
8 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
9 Sobic.003G342900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
10 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
11 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
12 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
13 Sobic.001G137600 ankyrin, putative, expressed -
14 Sobic.006G228000 glycine-rich protein 2, putative -
15 Sobic.003G300000 expressed protein -
16 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
17 Sobic.005G108225 - -
18 Sobic.009G048300 transcription factor X1, putative, expressed -
19 Sobic.007G128100 expressed protein -
20 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase


Gene co-expression network
sample Sobic009G083600 Sobic009G083600 Sobic003G117200 Sobic003G117200 Sobic009G083600--Sobic003G117200 Sobic001G279400 Sobic001G279400 Sobic009G083600--Sobic001G279400 Sobic004G352100 Sobic004G352100 Sobic009G083600--Sobic004G352100 Sobic007G033700 Sobic007G033700 Sobic009G083600--Sobic007G033700 Sobic002G342800 Sobic002G342800 Sobic009G083600--Sobic002G342800 Sobic009G243000 Sobic009G243000 Sobic009G083600--Sobic009G243000 Sobic010G079800 Sobic010G079800 Sobic009G083600--Sobic010G079800 Sobic001G455900 Sobic001G455900 Sobic009G083600--Sobic001G455900 Sobic003G342900 Sobic003G342900 Sobic009G083600--Sobic003G342900 Sobic006G271600 Sobic006G271600 Sobic003G117200--Sobic006G271600 Sobic002G078900 Sobic002G078900 Sobic003G117200--Sobic002G078900 Sobic010G183800 Sobic010G183800 Sobic003G117200--Sobic010G183800 Sobic003G046400 Sobic003G046400 Sobic003G117200--Sobic003G046400 Sobic003G300000 Sobic003G300000 Sobic003G117200--Sobic003G300000 Sobic001G071600 Sobic001G071600 Sobic003G117200--Sobic001G071600 Sobic003G117200--Sobic009G243000 Sobic003G006000 Sobic003G006000 Sobic003G117200--Sobic003G006000 Sobic009G048300 Sobic009G048300 Sobic003G117200--Sobic009G048300 Sobic003G088600 Sobic003G088600 Sobic001G279400--Sobic003G088600 Sobic001G279400--Sobic003G117200 Sobic001G279400--Sobic003G006000 Sobic008G070700 Sobic008G070700 Sobic001G279400--Sobic008G070700 Sobic010G092400 Sobic010G092400 Sobic001G279400--Sobic010G092400 Sobic009G012400 Sobic009G012400 Sobic001G279400--Sobic009G012400 Sobic008G137700 Sobic008G137700 Sobic001G279400--Sobic008G137700 Sobic003G085900 Sobic003G085900 Sobic001G279400--Sobic003G085900 Sobic001G137500 Sobic001G137500 Sobic001G279400--Sobic001G137500 Sobic007G209600 Sobic007G209600 Sobic004G352100--Sobic007G209600 Sobic002G203500 Sobic002G203500 Sobic004G352100--Sobic002G203500 Sobic010G026100 Sobic010G026100 Sobic004G352100--Sobic010G026100 Sobic002G184400 Sobic002G184400 Sobic004G352100--Sobic002G184400 Sobic008G151600 Sobic008G151600 Sobic004G352100--Sobic008G151600 Sobic007G070200 Sobic007G070200 Sobic004G352100--Sobic007G070200 Sobic009G087700 Sobic009G087700 Sobic004G352100--Sobic009G087700 Sobic007G161600 Sobic007G161600 Sobic004G352100--Sobic007G161600 Sobic006G202100 Sobic006G202100 Sobic004G352100--Sobic006G202100 Sobic007G033700--Sobic003G046400 Sobic007G033700--Sobic009G243000 Sobic001G137600 Sobic001G137600 Sobic007G033700--Sobic001G137600 Sobic007G033700--Sobic001G455900 Sobic006G163300 Sobic006G163300 Sobic007G033700--Sobic006G163300 Sobic010G070900 Sobic010G070900 Sobic007G033700--Sobic010G070900 Sobic007G033700--Sobic006G271600 Sobic007G033700--Sobic001G071600 Sobic004G237000 Sobic004G237000 Sobic007G033700--Sobic004G237000 Sobic002G342800--Sobic009G083600 Sobic002G342800--Sobic004G352100 Sobic002G342800--Sobic003G342900 Sobic002G342800--Sobic008G151600 Sobic007G128100 Sobic007G128100 Sobic002G342800--Sobic007G128100 Sobic003G353500 Sobic003G353500 Sobic002G342800--Sobic003G353500 Sobic007G147200 Sobic007G147200 Sobic002G342800--Sobic007G147200 Sobic002G342800--Sobic007G033700 Sobic001G464800 Sobic001G464800 Sobic002G342800--Sobic001G464800 Sobic009G243000--Sobic007G033700 Sobic009G243000--Sobic002G078900 Sobic009G243000--Sobic006G271600 Sobic009G243000--Sobic001G071600 Sobic002G205000 Sobic002G205000 Sobic009G243000--Sobic002G205000 Sobic009G243000--Sobic003G006000 Sobic009G243000--Sobic003G046400 Sobic009G243000--Sobic001G137600 Sobic002G258000 Sobic002G258000 Sobic009G243000--Sobic002G258000 Sobic001G239100 Sobic001G239100 Sobic010G079800--Sobic001G239100 Sobic007G050300 Sobic007G050300 Sobic010G079800--Sobic007G050300 Sobic001G136500 Sobic001G136500 Sobic010G079800--Sobic001G136500 Sobic004G146200 Sobic004G146200 Sobic010G079800--Sobic004G146200 Sobic007G153700 Sobic007G153700 Sobic010G079800--Sobic007G153700 Sobic007G031100 Sobic007G031100 Sobic010G079800--Sobic007G031100 Sobic001G478700 Sobic001G478700 Sobic010G079800--Sobic001G478700 Sobic004G206300 Sobic004G206300 Sobic010G079800--Sobic004G206300 Sobic001G188700 Sobic001G188700 Sobic010G079800--Sobic001G188700 Sobic001G455900--Sobic003G046400 Sobic001G455900--Sobic006G163300 Sobic001G455900--Sobic007G033700 Sobic001G455900--Sobic009G243000 Sobic010G247000 Sobic010G247000 Sobic001G455900--Sobic010G247000 Sobic001G455900--Sobic006G271600 Sobic001G455900--Sobic001G071600 Sobic001G455900--Sobic001G137600 Sobic001G455900--Sobic010G070900 Sobic003G316601 Sobic003G316601 Sobic003G342900--Sobic003G316601 Sobic003G342900--Sobic007G147200 Sobic010G014500 Sobic010G014500 Sobic003G342900--Sobic010G014500 Sobic001G138800 Sobic001G138800 Sobic003G342900--Sobic001G138800 Sobic003G342900--Sobic009G087700 Sobic003G342900--Sobic004G237000 Sobic007G132900 Sobic007G132900 Sobic003G342900--Sobic007G132900 Sobic006G107500 Sobic006G107500 Sobic003G342900--Sobic006G107500 Sobic001G143400 Sobic001G143400 Sobic003G342900--Sobic001G143400
Octagon: transcription factors


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