Gene annotation
Transcriptome id Sobic.002G342800.1
Synonym
Functional annotation GRAS family transcription factor domain containing protein, expressed
UniProt A0A1B6QF06
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF35
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41920 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os07g38030.1 : GRAS family transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a013152 , Zm00025a048425 , Zm00025a028254 , Zm00025a033336
Brachypodium KQK08963 , KQK15674
Barley HORVU1Hr1G090800.1 , HORVU0Hr1G003230.1 , HORVU0Hr1G003230.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G083600 OsCML18 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
2 Sobic.004G352100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
3 Sobic.003G342900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
4 Sobic.008G151600 PMR5, putative, expressed -
5 Sobic.007G128100 expressed protein -
6 Sobic.003G353500 aspartic proteinase nepenthesin precursor, putative, expressed -
7 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
8 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
9 Sobic.001G464800 cyclin, putative, expressed K18811: cyclin D5, plant
10 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
11 Sobic.007G023100 CCT motif family protein, expressed -
12 Sobic.001G279400 - -
13 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
14 Sobic.009G087700 proline-rich family protein, putative, expressed -
15 Sobic.010G255000 uncharacterized protein At4g06744 precursor, putative, expressed -
16 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
17 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
18 Sobic.006G084201 - -
19 Sobic.006G107500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -


Gene co-expression network
sample Sobic002G342800 Sobic002G342800 Sobic009G083600 Sobic009G083600 Sobic002G342800--Sobic009G083600 Sobic004G352100 Sobic004G352100 Sobic002G342800--Sobic004G352100 Sobic003G342900 Sobic003G342900 Sobic002G342800--Sobic003G342900 Sobic008G151600 Sobic008G151600 Sobic002G342800--Sobic008G151600 Sobic007G128100 Sobic007G128100 Sobic002G342800--Sobic007G128100 Sobic003G353500 Sobic003G353500 Sobic002G342800--Sobic003G353500 Sobic007G147200 Sobic007G147200 Sobic002G342800--Sobic007G147200 Sobic007G033700 Sobic007G033700 Sobic002G342800--Sobic007G033700 Sobic001G464800 Sobic001G464800 Sobic002G342800--Sobic001G464800 Sobic003G117200 Sobic003G117200 Sobic009G083600--Sobic003G117200 Sobic001G279400 Sobic001G279400 Sobic009G083600--Sobic001G279400 Sobic009G083600--Sobic004G352100 Sobic009G083600--Sobic007G033700 Sobic009G083600--Sobic002G342800 Sobic009G243000 Sobic009G243000 Sobic009G083600--Sobic009G243000 Sobic010G079800 Sobic010G079800 Sobic009G083600--Sobic010G079800 Sobic001G455900 Sobic001G455900 Sobic009G083600--Sobic001G455900 Sobic009G083600--Sobic003G342900 Sobic007G209600 Sobic007G209600 Sobic004G352100--Sobic007G209600 Sobic002G203500 Sobic002G203500 Sobic004G352100--Sobic002G203500 Sobic010G026100 Sobic010G026100 Sobic004G352100--Sobic010G026100 Sobic002G184400 Sobic002G184400 Sobic004G352100--Sobic002G184400 Sobic004G352100--Sobic008G151600 Sobic007G070200 Sobic007G070200 Sobic004G352100--Sobic007G070200 Sobic009G087700 Sobic009G087700 Sobic004G352100--Sobic009G087700 Sobic007G161600 Sobic007G161600 Sobic004G352100--Sobic007G161600 Sobic006G202100 Sobic006G202100 Sobic004G352100--Sobic006G202100 Sobic003G316601 Sobic003G316601 Sobic003G342900--Sobic003G316601 Sobic003G342900--Sobic007G147200 Sobic010G014500 Sobic010G014500 Sobic003G342900--Sobic010G014500 Sobic001G138800 Sobic001G138800 Sobic003G342900--Sobic001G138800 Sobic003G342900--Sobic009G087700 Sobic004G237000 Sobic004G237000 Sobic003G342900--Sobic004G237000 Sobic007G132900 Sobic007G132900 Sobic003G342900--Sobic007G132900 Sobic006G107500 Sobic006G107500 Sobic003G342900--Sobic006G107500 Sobic001G143400 Sobic001G143400 Sobic003G342900--Sobic001G143400 Sobic003G019900 Sobic003G019900 Sobic008G151600--Sobic003G019900 Sobic006G221800 Sobic006G221800 Sobic008G151600--Sobic006G221800 Sobic006G274200 Sobic006G274200 Sobic008G151600--Sobic006G274200 Sobic001G493900 Sobic001G493900 Sobic008G151600--Sobic001G493900 Sobic001G101700 Sobic001G101700 Sobic008G151600--Sobic001G101700 Sobic010G077000 Sobic010G077000 Sobic008G151600--Sobic010G077000 Sobic008G151600--Sobic007G161600 Sobic005G032600 Sobic005G032600 Sobic008G151600--Sobic005G032600 Sobic008G151600--Sobic007G147200 Sobic007G023100 Sobic007G023100 Sobic007G128100--Sobic007G023100 Sobic005G062600 Sobic005G062600 Sobic007G128100--Sobic005G062600 Sobic007G128100--Sobic007G161600 Sobic008G038200 Sobic008G038200 Sobic007G128100--Sobic008G038200 Sobic001G298800 Sobic001G298800 Sobic007G128100--Sobic001G298800 Sobic003G027800 Sobic003G027800 Sobic007G128100--Sobic003G027800 Sobic007G128100--Sobic003G019900 Sobic007G128100--Sobic008G151600 Sobic003G008800 Sobic003G008800 Sobic007G128100--Sobic003G008800 Sobic003G353500--Sobic007G128100 Sobic003G353500--Sobic005G062600 Sobic003G390700 Sobic003G390700 Sobic003G353500--Sobic003G390700 Sobic003G353500--Sobic002G342800 Sobic003G353500--Sobic007G023100 Sobic001G446400 Sobic001G446400 Sobic003G353500--Sobic001G446400 Sobic001G518000 Sobic001G518000 Sobic003G353500--Sobic001G518000 Sobic001G382400 Sobic001G382400 Sobic003G353500--Sobic001G382400 Sobic007G121600 Sobic007G121600 Sobic003G353500--Sobic007G121600 Sobic010G070900 Sobic010G070900 Sobic007G147200--Sobic010G070900 Sobic010G255000 Sobic010G255000 Sobic007G147200--Sobic010G255000 Sobic004G003700 Sobic004G003700 Sobic007G147200--Sobic004G003700 Sobic003G046400 Sobic003G046400 Sobic007G147200--Sobic003G046400 Sobic006G163300 Sobic006G163300 Sobic007G147200--Sobic006G163300 Sobic007G147200--Sobic001G143400 Sobic007G147200--Sobic003G019900 Sobic007G147200--Sobic006G107500 Sobic007G147200--Sobic001G101700 Sobic007G033700--Sobic003G046400 Sobic007G033700--Sobic009G243000 Sobic001G137600 Sobic001G137600 Sobic007G033700--Sobic001G137600 Sobic007G033700--Sobic001G455900 Sobic007G033700--Sobic006G163300 Sobic007G033700--Sobic010G070900 Sobic006G271600 Sobic006G271600 Sobic007G033700--Sobic006G271600 Sobic001G071600 Sobic001G071600 Sobic007G033700--Sobic001G071600 Sobic007G033700--Sobic004G237000 Sobic001G464800--Sobic006G163300 Sobic010G092400 Sobic010G092400 Sobic001G464800--Sobic010G092400 Sobic001G464800--Sobic007G147200 Sobic001G464800--Sobic010G070900 Sobic001G464800--Sobic006G107500 Sobic001G101900 Sobic001G101900 Sobic001G464800--Sobic001G101900 Sobic002G360600 Sobic002G360600 Sobic001G464800--Sobic002G360600 Sobic002G430700 Sobic002G430700 Sobic001G464800--Sobic002G430700 Sobic001G464800--Sobic010G014500
Octagon: transcription factors


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