Gene annotation
Transcriptome id Sobic.001G467200.2,Sobic.001G467200.1
Synonym Sb01g043840, NPGR1
Functional annotation NPGR1, putative, expressed
UniProt A0A1Z5SAV3 , C5WTU6 , Q8MBV7
Pfam PF00515
Panther DB PTHR23083 PTHR23083:SF195
NCBI CDD KOG4162; Predicted calmodulin-binding protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G27460 : no pollen germination related 1
RAP-DB (Rice) LOC_Os03g10350.1,LOC_Os03g10350.2 : NPGR1, putative, expressed
MaizeGDB (Corn) Zm00025a001173
Brachypodium KQK23086
Barley HORVU4Hr1G070380.9 , HORVU4Hr1G070380.14 , HORVU4Hr1G070380.15 , HORVU4Hr1G070380.16 , HORVU4Hr1G070380.17 , HORVU4Hr1G070380.10 , HORVU4Hr1G070380.11 , HORVU4Hr1G070380.12 , HORVU4Hr1G070380.13 , HORVU4Hr1G070380.18 , HORVU4Hr1G070380.19 , HORVU4Hr1G070380.21 , HORVU4Hr1G070380.20 , HORVU4Hr1G070380.8 , HORVU4Hr1G070380.6 , HORVU4Hr1G070380.7 , HORVU4Hr1G070380.4 , HORVU4Hr1G070380.5 , HORVU4Hr1G070380.2 , HORVU4Hr1G070380.3 , HORVU4Hr1G070380.1 , HORVU6Hr1G028130.1
Wheat TraesCS4D02G260300 , TraesCS4A02G044800 , TraesCS4B02G260500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G406600 Highest expression level in primordial inflorescence(PubMedID : 27501690)@"GW8/OsPL16(Ortholog in rice:Wang et al., 2012)"(PubMedID : 31659873)@OsSPL2 - SBP-box gene family member, expressed -
2 Sobic.004G004600 IQ calmodulin-binding motif family protein, putative, expressed -
3 Sobic.010G095800 expressed protein -
4 Sobic.003G356600 ATROPGEF7/ROPGEF7, putative, expressed -
5 Sobic.002G400600 Os7bglu26 - beta-mannosidase/glucosidase/exoglucanase, expressed K05350: beta-glucosidase
6 Sobic.002G115200 cysteine-rich repeat secretory protein precursor, putative, expressed -
7 Sobic.010G276600 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
8 Sobic.003G230000 serine/threonine-protein kinase, putative, expressed -
9 Sobic.003G302000 expressed protein -
10 Sobic.001G488900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
11 Sobic.001G435201 - -
12 Sobic.010G173700 tetraspanin family protein, putative, expressed -
13 Sobic.002G002100 expressed protein -
14 Sobic.001G199400 monocopper oxidase, putative, expressed -
15 Sobic.001G113800 receptor protein kinase TMK1 precursor, putative, expressed -
16 Sobic.002G227900 gibberellin receptor GID1L2, putative, expressed -
17 Sobic.003G300200 expressed protein -
18 Sobic.001G379900 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
19 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
20 Sobic.001G434100 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2


Gene co-expression network
sample Sobic001G467200 Sobic001G467200 Sobic003G406600 Sobic003G406600 Sobic001G467200--Sobic003G406600 Sobic004G004600 Sobic004G004600 Sobic001G467200--Sobic004G004600 Sobic010G095800 Sobic010G095800 Sobic001G467200--Sobic010G095800 Sobic003G356600 Sobic003G356600 Sobic001G467200--Sobic003G356600 Sobic002G400600 Sobic002G400600 Sobic001G467200--Sobic002G400600 Sobic002G115200 Sobic002G115200 Sobic001G467200--Sobic002G115200 Sobic010G276600 Sobic010G276600 Sobic001G467200--Sobic010G276600 Sobic003G230000 Sobic003G230000 Sobic001G467200--Sobic003G230000 Sobic003G302000 Sobic003G302000 Sobic001G467200--Sobic003G302000 Sobic010G173700 Sobic010G173700 Sobic003G406600--Sobic010G173700 Sobic001G116600 Sobic001G116600 Sobic003G406600--Sobic001G116600 Sobic007G023100 Sobic007G023100 Sobic003G406600--Sobic007G023100 Sobic003G406600--Sobic003G356600 Sobic007G070200 Sobic007G070200 Sobic003G406600--Sobic007G070200 Sobic003G406600--Sobic001G467200 Sobic006G046600 Sobic006G046600 Sobic003G406600--Sobic006G046600 Sobic010G029000 Sobic010G029000 Sobic003G406600--Sobic010G029000 Sobic003G406600--Sobic003G230000 Sobic006G188800 Sobic006G188800 Sobic004G004600--Sobic006G188800 Sobic004G004600--Sobic001G467200 Sobic001G143600 Sobic001G143600 Sobic004G004600--Sobic001G143600 Sobic008G015200 Sobic008G015200 Sobic004G004600--Sobic008G015200 Sobic005G021900 Sobic005G021900 Sobic004G004600--Sobic005G021900 Sobic001G108400 Sobic001G108400 Sobic004G004600--Sobic001G108400 Sobic003G311500 Sobic003G311500 Sobic004G004600--Sobic003G311500 Sobic002G002100 Sobic002G002100 Sobic004G004600--Sobic002G002100 Sobic004G309800 Sobic004G309800 Sobic004G004600--Sobic004G309800 Sobic010G095800--Sobic003G356600 Sobic002G416400 Sobic002G416400 Sobic010G095800--Sobic002G416400 Sobic006G167000 Sobic006G167000 Sobic010G095800--Sobic006G167000 Sobic007G076100 Sobic007G076100 Sobic010G095800--Sobic007G076100 Sobic003G178500 Sobic003G178500 Sobic010G095800--Sobic003G178500 Sobic003G300400 Sobic003G300400 Sobic010G095800--Sobic003G300400 Sobic010G095800--Sobic002G115200 Sobic005G218000 Sobic005G218000 Sobic010G095800--Sobic005G218000 Sobic009G141300 Sobic009G141300 Sobic010G095800--Sobic009G141300 Sobic004G274600 Sobic004G274600 Sobic003G356600--Sobic004G274600 Sobic004G211700 Sobic004G211700 Sobic003G356600--Sobic004G211700 Sobic002G363300 Sobic002G363300 Sobic003G356600--Sobic002G363300 Sobic001G199400 Sobic001G199400 Sobic003G356600--Sobic001G199400 Sobic008G008100 Sobic008G008100 Sobic003G356600--Sobic008G008100 Sobic009G146700 Sobic009G146700 Sobic003G356600--Sobic009G146700 Sobic003G070600 Sobic003G070600 Sobic003G356600--Sobic003G070600 Sobic002G312200 Sobic002G312200 Sobic003G356600--Sobic002G312200 Sobic010G014700 Sobic010G014700 Sobic003G356600--Sobic010G014700 Sobic003G339600 Sobic003G339600 Sobic002G400600--Sobic003G339600 Sobic002G400600--Sobic004G274600 Sobic002G400600--Sobic003G070600 Sobic002G400600--Sobic003G300400 Sobic003G113500 Sobic003G113500 Sobic002G400600--Sobic003G113500 Sobic002G400600--Sobic004G211700 Sobic010G020600 Sobic010G020600 Sobic002G400600--Sobic010G020600 Sobic007G165800 Sobic007G165800 Sobic002G400600--Sobic007G165800 Sobic008G097700 Sobic008G097700 Sobic002G400600--Sobic008G097700 Sobic004G062100 Sobic004G062100 Sobic002G115200--Sobic004G062100 Sobic006G160800 Sobic006G160800 Sobic002G115200--Sobic006G160800 Sobic009G254500 Sobic009G254500 Sobic002G115200--Sobic009G254500 Sobic010G215700 Sobic010G215700 Sobic002G115200--Sobic010G215700 Sobic002G115200--Sobic002G400600 Sobic002G115200--Sobic005G218000 Sobic001G438500 Sobic001G438500 Sobic002G115200--Sobic001G438500 Sobic002G011000 Sobic002G011000 Sobic002G115200--Sobic002G011000 Sobic002G251200 Sobic002G251200 Sobic002G115200--Sobic002G251200 Sobic003G010700 Sobic003G010700 Sobic010G276600--Sobic003G010700 Sobic010G168700 Sobic010G168700 Sobic010G276600--Sobic010G168700 Sobic006G273600 Sobic006G273600 Sobic010G276600--Sobic006G273600 Sobic005G199700 Sobic005G199700 Sobic010G276600--Sobic005G199700 Sobic007G170100 Sobic007G170100 Sobic010G276600--Sobic007G170100 Sobic003G338700 Sobic003G338700 Sobic010G276600--Sobic003G338700 Sobic001G379900 Sobic001G379900 Sobic010G276600--Sobic001G379900 Sobic006G163300 Sobic006G163300 Sobic010G276600--Sobic006G163300 Sobic001G286700 Sobic001G286700 Sobic010G276600--Sobic001G286700 Sobic002G227900 Sobic002G227900 Sobic003G230000--Sobic002G227900 Sobic003G307200 Sobic003G307200 Sobic003G230000--Sobic003G307200 Sobic001G493900 Sobic001G493900 Sobic003G230000--Sobic001G493900 Sobic004G267600 Sobic004G267600 Sobic003G230000--Sobic004G267600 Sobic002G394500 Sobic002G394500 Sobic003G230000--Sobic002G394500 Sobic002G360500 Sobic002G360500 Sobic003G230000--Sobic002G360500 Sobic003G230000--Sobic001G199400 Sobic006G219500 Sobic006G219500 Sobic003G230000--Sobic006G219500 Sobic001G231200 Sobic001G231200 Sobic003G230000--Sobic001G231200 Sobic003G302000--Sobic007G165800 Sobic003G302000--Sobic004G274600 Sobic007G163400 Sobic007G163400 Sobic003G302000--Sobic007G163400 Sobic003G302000--Sobic007G170100 Sobic007G180200 Sobic007G180200 Sobic003G302000--Sobic007G180200 Sobic003G302000--Sobic003G356600 Sobic003G302000--Sobic005G199700 Sobic003G302000--Sobic008G097700 Sobic003G302000--Sobic001G286700
Octagon: transcription factors


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