Gene annotation
Transcriptome id Sobic.006G207400.1
Synonym Sb06g027830
Functional annotation expressed protein
UniProt C5YFJ4
Pfam -
Panther DB PTHR33709 PTHR33709:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16860 : Ubiquitin-specific protease family C19-related protein
RAP-DB (Rice) LOC_Os08g13350.1 : expressed protein
MaizeGDB (Corn) Zm00025a048829 , Zm00025a009882 , Zm00025a054944 , Zm00025a029890 , Zm00025a056969
Brachypodium PNT66914 , KQJ95671 , KQJ95670 , KQJ95668 , KQJ95669 , KQJ84448 , KQJ84447
Barley HORVU2Hr1G100660.7 , HORVU2Hr1G100660.6 , HORVU2Hr1G100660.5 , HORVU2Hr1G100660.4 , HORVU2Hr1G100660.3 , HORVU2Hr1G100660.2 , HORVU2Hr1G100660.1 , HORVU2Hr1G100700.2 , HORVU2Hr1G100700.3 , HORVU7Hr1G061070.11 , HORVU7Hr1G061070.10 , HORVU7Hr1G061070.5 , HORVU7Hr1G061070.4 , HORVU2Hr1G100700.6 , HORVU7Hr1G061070.6 , HORVU2Hr1G100700.4 , HORVU2Hr1G100700.5 , HORVU7Hr1G061070.7 , HORVU7Hr1G061070.1 , HORVU2Hr1G100700.1 , HORVU7Hr1G061070.3 , HORVU7Hr1G061070.2 , HORVU7Hr1G061070.9 , HORVU7Hr1G061070.8
Wheat TraesCS2A02G431500 , TraesCS2A02G431500 , TraesCS2B02G453000 , TraesCS2B02G453000 , TraesCS2D02G429600 , TraesCS7D02G282000 , TraesCS7D02G282000 , TraesCS7D02G282000 , TraesCS2D02G429500 , TraesCS2A02G431600 , TraesCS7D02G282000 , TraesCS7A02G283600 , TraesCS7A02G283600 , TraesCS7A02G283600 , TraesCS7A02G283600 , TraesCS7A02G283600 , TraesCS2B02G453100 , TraesCS7B02G176900 , TraesCS7B02G176900 , TraesCS7B02G176900 , TraesCS7B02G176900 , TraesCS7B02G176900 , TraesCS7B02G176900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G207400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G309800 remorin C-terminal domain containing protein, putative, expressed -
2 Sobic.001G231200 expressed protein -
3 Sobic.008G096200 AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
4 Sobic.007G094400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fiber protein Fb34, putative, expressed -
5 Sobic.001G261549 - -
6 Sobic.003G230000 serine/threonine-protein kinase, putative, expressed -
7 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
8 Sobic.001G108400 LRR receptor-like protein kinase, putative, expressed -
9 Sobic.007G166800 domain of unknown function DUF966 domain containing protein, expressed -
10 Sobic.001G289900 AT hook motif domain containing protein, expressed -
11 Sobic.002G146601 - -
12 Sobic.002G313600 src homology-3 domain protein 3, putative, expressed -
13 Sobic.002G161700 Myb-like DNA-binding domain containing protein, putative, expressed -
14 Sobic.006G189200 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
15 Sobic.006G218400 OsFBK15 - F-box domain and kelch repeat containing protein, expressed -
16 Sobic.002G394500 proline-rich family protein, putative, expressed -
17 Sobic.009G001200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
18 Sobic.001G369800 monocopper oxidase, putative, expressed -
19 Sobic.004G308100 uncharacterized Cys-rich domain containing protein, putative, expressed -
20 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1


Gene co-expression network
sample Sobic006G207400 Sobic006G207400 Sobic004G309800 Sobic004G309800 Sobic006G207400--Sobic004G309800 Sobic001G231200 Sobic001G231200 Sobic006G207400--Sobic001G231200 Sobic008G096200 Sobic008G096200 Sobic006G207400--Sobic008G096200 Sobic007G094400 Sobic007G094400 Sobic006G207400--Sobic007G094400 Sobic001G261549 Sobic001G261549 Sobic006G207400--Sobic001G261549 Sobic003G230000 Sobic003G230000 Sobic006G207400--Sobic003G230000 Sobic001G487200 Sobic001G487200 Sobic006G207400--Sobic001G487200 Sobic001G108400 Sobic001G108400 Sobic006G207400--Sobic001G108400 Sobic007G166800 Sobic007G166800 Sobic006G207400--Sobic007G166800 Sobic004G309800--Sobic006G207400 Sobic004G309800--Sobic003G230000 Sobic001G113800 Sobic001G113800 Sobic004G309800--Sobic001G113800 Sobic004G309800--Sobic007G094400 Sobic003G283600 Sobic003G283600 Sobic004G309800--Sobic003G283600 Sobic001G290500 Sobic001G290500 Sobic004G309800--Sobic001G290500 Sobic001G404700 Sobic001G404700 Sobic004G309800--Sobic001G404700 Sobic004G309800--Sobic001G231200 Sobic004G331200 Sobic004G331200 Sobic004G309800--Sobic004G331200 Sobic001G231200--Sobic008G096200 Sobic001G231200--Sobic001G487200 Sobic002G370400 Sobic002G370400 Sobic001G231200--Sobic002G370400 Sobic010G211800 Sobic010G211800 Sobic001G231200--Sobic010G211800 Sobic010G105400 Sobic010G105400 Sobic001G231200--Sobic010G105400 Sobic010G129700 Sobic010G129700 Sobic001G231200--Sobic010G129700 Sobic003G013000 Sobic003G013000 Sobic001G231200--Sobic003G013000 Sobic003G444100 Sobic003G444100 Sobic001G231200--Sobic003G444100 Sobic002G394500 Sobic002G394500 Sobic001G231200--Sobic002G394500 Sobic008G096200--Sobic001G231200 Sobic008G096200--Sobic010G105400 Sobic008G096200--Sobic010G211800 Sobic008G096200--Sobic002G394500 Sobic008G096200--Sobic001G487200 Sobic005G144600 Sobic005G144600 Sobic008G096200--Sobic005G144600 Sobic003G420300 Sobic003G420300 Sobic008G096200--Sobic003G420300 Sobic002G426800 Sobic002G426800 Sobic008G096200--Sobic002G426800 Sobic008G096200--Sobic001G261549 Sobic010G277300 Sobic010G277300 Sobic007G094400--Sobic010G277300 Sobic001G107200 Sobic001G107200 Sobic007G094400--Sobic001G107200 Sobic006G191700 Sobic006G191700 Sobic007G094400--Sobic006G191700 Sobic004G286700 Sobic004G286700 Sobic007G094400--Sobic004G286700 Sobic007G094400--Sobic008G096200 Sobic007G094400--Sobic001G487200 Sobic001G528600 Sobic001G528600 Sobic007G094400--Sobic001G528600 Sobic001G051300 Sobic001G051300 Sobic007G094400--Sobic001G051300 Sobic007G094400--Sobic006G207400 Sobic006G102900 Sobic006G102900 Sobic001G261549--Sobic006G102900 Sobic004G285900 Sobic004G285900 Sobic001G261549--Sobic004G285900 Sobic009G189200 Sobic009G189200 Sobic001G261549--Sobic009G189200 Sobic001G261549--Sobic006G191700 Sobic009G194900 Sobic009G194900 Sobic001G261549--Sobic009G194900 Sobic003G107200 Sobic003G107200 Sobic001G261549--Sobic003G107200 Sobic001G078600 Sobic001G078600 Sobic001G261549--Sobic001G078600 Sobic007G154500 Sobic007G154500 Sobic001G261549--Sobic007G154500 Sobic001G261549--Sobic008G096200 Sobic002G227900 Sobic002G227900 Sobic003G230000--Sobic002G227900 Sobic003G307200 Sobic003G307200 Sobic003G230000--Sobic003G307200 Sobic001G493900 Sobic001G493900 Sobic003G230000--Sobic001G493900 Sobic004G267600 Sobic004G267600 Sobic003G230000--Sobic004G267600 Sobic003G230000--Sobic002G394500 Sobic002G360500 Sobic002G360500 Sobic003G230000--Sobic002G360500 Sobic001G199400 Sobic001G199400 Sobic003G230000--Sobic001G199400 Sobic006G219500 Sobic006G219500 Sobic003G230000--Sobic006G219500 Sobic003G230000--Sobic001G231200 Sobic004G315700 Sobic004G315700 Sobic001G487200--Sobic004G315700 Sobic009G212100 Sobic009G212100 Sobic001G487200--Sobic009G212100 Sobic001G369800 Sobic001G369800 Sobic001G487200--Sobic001G369800 Sobic001G487200--Sobic001G231200 Sobic001G487200--Sobic002G370400 Sobic003G226700 Sobic003G226700 Sobic001G487200--Sobic003G226700 Sobic001G540700 Sobic001G540700 Sobic001G487200--Sobic001G540700 Sobic001G296800 Sobic001G296800 Sobic001G487200--Sobic001G296800 Sobic007G084200 Sobic007G084200 Sobic001G487200--Sobic007G084200 Sobic007G044400 Sobic007G044400 Sobic001G108400--Sobic007G044400 Sobic003G410600 Sobic003G410600 Sobic001G108400--Sobic003G410600 Sobic002G313600 Sobic002G313600 Sobic001G108400--Sobic002G313600 Sobic009G001200 Sobic009G001200 Sobic001G108400--Sobic009G001200 Sobic001G108400--Sobic001G404700 Sobic001G108400--Sobic006G207400 Sobic003G017500 Sobic003G017500 Sobic001G108400--Sobic003G017500 Sobic001G169800 Sobic001G169800 Sobic001G108400--Sobic001G169800 Sobic001G026600 Sobic001G026600 Sobic001G108400--Sobic001G026600 Sobic007G166800--Sobic001G487200 Sobic007G166800--Sobic010G129700 Sobic006G254500 Sobic006G254500 Sobic007G166800--Sobic006G254500 Sobic001G285200 Sobic001G285200 Sobic007G166800--Sobic001G285200 Sobic006G218900 Sobic006G218900 Sobic007G166800--Sobic006G218900 Sobic005G021900 Sobic005G021900 Sobic007G166800--Sobic005G021900 Sobic007G166800--Sobic001G231200 Sobic007G166800--Sobic004G315700 Sobic007G166800--Sobic001G540700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.