Gene annotation
Transcriptome id Sobic.004G025700.1
Synonym Sb04g002270
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XTQ7
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF414
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G71210 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g03530.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018820
Brachypodium KQJ93084
Barley HORVU6Hr1G015100.12 , HORVU6Hr1G015100.11 , HORVU6Hr1G015100.10 , HORVU6Hr1G015100.9 , HORVU6Hr1G015100.8 , HORVU6Hr1G015100.3 , HORVU6Hr1G015100.2 , HORVU6Hr1G015100.1 , HORVU6Hr1G015100.7 , HORVU6Hr1G015100.6 , HORVU6Hr1G015100.5 , HORVU6Hr1G015100.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
2 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
3 Sobic.006G191000 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
4 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
5 Sobic.007G226800 -(PubMedID : 26976818)@dicarboxylate transporter 5(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
6 Sobic.001G486900 exostosin family protein, putative, expressed -
7 Sobic.010G112600 integral membrane protein, putative, expressed -
8 Sobic.002G400151 - -
9 Sobic.004G194400 expressed protein -
10 Sobic.001G498800 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
11 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
12 Sobic.001G478900 pentatricopeptide, putative, expressed -
13 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
14 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
15 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
16 Sobic.006G204700 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8
17 Sobic.001G327000 OsFBX157 - F-box domain containing protein, expressed -
18 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
19 Sobic.007G204000 methyl-binding domain protein MBD, putative, expressed -
20 Sobic.006G237500 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G025700 Sobic004G025700 Sobic003G394500 Sobic003G394500 Sobic004G025700--Sobic003G394500 Sobic008G095900 Sobic008G095900 Sobic004G025700--Sobic008G095900 Sobic006G191000 Sobic006G191000 Sobic004G025700--Sobic006G191000 Sobic010G086300 Sobic010G086300 Sobic004G025700--Sobic010G086300 Sobic007G226800 Sobic007G226800 Sobic004G025700--Sobic007G226800 Sobic001G486900 Sobic001G486900 Sobic004G025700--Sobic001G486900 Sobic010G112600 Sobic010G112600 Sobic004G025700--Sobic010G112600 Sobic002G400151 Sobic002G400151 Sobic004G025700--Sobic002G400151 Sobic004G194400 Sobic004G194400 Sobic004G025700--Sobic004G194400 Sobic003G117800 Sobic003G117800 Sobic003G394500--Sobic003G117800 Sobic001G385000 Sobic001G385000 Sobic003G394500--Sobic001G385000 Sobic004G350700 Sobic004G350700 Sobic003G394500--Sobic004G350700 Sobic001G378800 Sobic001G378800 Sobic003G394500--Sobic001G378800 Sobic007G118500 Sobic007G118500 Sobic003G394500--Sobic007G118500 Sobic003G190200 Sobic003G190200 Sobic003G394500--Sobic003G190200 Sobic006G232800 Sobic006G232800 Sobic003G394500--Sobic006G232800 Sobic007G030100 Sobic007G030100 Sobic003G394500--Sobic007G030100 Sobic001G424800 Sobic001G424800 Sobic003G394500--Sobic001G424800 Sobic008G095900--Sobic004G194400 Sobic001G308500 Sobic001G308500 Sobic008G095900--Sobic001G308500 Sobic004G051600 Sobic004G051600 Sobic008G095900--Sobic004G051600 Sobic001G478900 Sobic001G478900 Sobic008G095900--Sobic001G478900 Sobic008G085950 Sobic008G085950 Sobic008G095900--Sobic008G085950 Sobic008G095900--Sobic006G191000 Sobic008G095900--Sobic010G086300 Sobic006G071362 Sobic006G071362 Sobic008G095900--Sobic006G071362 Sobic003G004800 Sobic003G004800 Sobic008G095900--Sobic003G004800 Sobic006G191000--Sobic010G086300 Sobic001G149000 Sobic001G149000 Sobic006G191000--Sobic001G149000 Sobic006G191000--Sobic003G394500 Sobic008G152700 Sobic008G152700 Sobic006G191000--Sobic008G152700 Sobic006G191000--Sobic004G194400 Sobic006G191000--Sobic006G232800 Sobic009G046900 Sobic009G046900 Sobic006G191000--Sobic009G046900 Sobic010G274800 Sobic010G274800 Sobic006G191000--Sobic010G274800 Sobic002G304700 Sobic002G304700 Sobic006G191000--Sobic002G304700 Sobic010G086300--Sobic001G385000 Sobic010G086300--Sobic006G232800 Sobic010G086300--Sobic003G394500 Sobic010G086300--Sobic001G149000 Sobic008G022400 Sobic008G022400 Sobic010G086300--Sobic008G022400 Sobic009G025700 Sobic009G025700 Sobic010G086300--Sobic009G025700 Sobic002G362500 Sobic002G362500 Sobic010G086300--Sobic002G362500 Sobic010G086300--Sobic006G191000 Sobic010G086300--Sobic009G046900 Sobic001G203600 Sobic001G203600 Sobic007G226800--Sobic001G203600 Sobic007G226800--Sobic010G086300 Sobic008G072500 Sobic008G072500 Sobic007G226800--Sobic008G072500 Sobic007G226800--Sobic009G025700 Sobic007G226800--Sobic004G025700 Sobic003G049200 Sobic003G049200 Sobic007G226800--Sobic003G049200 Sobic001G011000 Sobic001G011000 Sobic007G226800--Sobic001G011000 Sobic010G133400 Sobic010G133400 Sobic007G226800--Sobic010G133400 Sobic007G226800--Sobic001G378800 Sobic001G486900--Sobic010G086300 Sobic001G486900--Sobic001G378800 Sobic001G486900--Sobic001G385000 Sobic001G486900--Sobic003G394500 Sobic001G486900--Sobic006G232800 Sobic001G486900--Sobic001G149000 Sobic004G077300 Sobic004G077300 Sobic001G486900--Sobic004G077300 Sobic006G134500 Sobic006G134500 Sobic001G486900--Sobic006G134500 Sobic001G505600 Sobic001G505600 Sobic001G486900--Sobic001G505600 Sobic005G123400 Sobic005G123400 Sobic010G112600--Sobic005G123400 Sobic010G112600--Sobic003G117800 Sobic010G112600--Sobic004G194400 Sobic010G277700 Sobic010G277700 Sobic010G112600--Sobic010G277700 Sobic010G112600--Sobic003G190200 Sobic009G252300 Sobic009G252300 Sobic010G112600--Sobic009G252300 Sobic010G112600--Sobic003G394500 Sobic006G237500 Sobic006G237500 Sobic010G112600--Sobic006G237500 Sobic008G155400 Sobic008G155400 Sobic010G112600--Sobic008G155400 Sobic006G106300 Sobic006G106300 Sobic002G400151--Sobic006G106300 Sobic001G043200 Sobic001G043200 Sobic002G400151--Sobic001G043200 Sobic003G143800 Sobic003G143800 Sobic002G400151--Sobic003G143800 Sobic003G409900 Sobic003G409900 Sobic002G400151--Sobic003G409900 Sobic001G205100 Sobic001G205100 Sobic002G400151--Sobic001G205100 Sobic003G021600 Sobic003G021600 Sobic002G400151--Sobic003G021600 Sobic002G400151--Sobic003G394500 Sobic001G474400 Sobic001G474400 Sobic002G400151--Sobic001G474400 Sobic002G400151--Sobic004G025700 Sobic004G194400--Sobic006G071362 Sobic004G194400--Sobic006G134500 Sobic006G265800 Sobic006G265800 Sobic004G194400--Sobic006G265800 Sobic003G428000 Sobic003G428000 Sobic004G194400--Sobic003G428000 Sobic004G194400--Sobic010G277700 Sobic004G194400--Sobic001G308500 Sobic004G194400--Sobic001G149000 Sobic003G385300 Sobic003G385300 Sobic004G194400--Sobic003G385300 Sobic004G194400--Sobic010G274800
Octagon: transcription factors


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